Brassica napus (rape): 106368634
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Entry
106368634 CDS
T04128
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 6
KO
K05391
cyclic nucleotide gated channel, plant
Organism
bna
Brassica napus (rape)
Pathway
bna04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
106368634
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bna04040
]
106368634
Ion channels [BR:
bna04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
106368634
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Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ
IQCJ-SCHIP1
Motif
Other DBs
NCBI-GeneID:
106368634
NCBI-ProteinID:
XP_013664096
UniProt:
A0A078HDB1
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Position
A9:38945879..38949952
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AA seq
737 aa
AA seq
DB search
MESKSQVISGHREKFIRLDSMDPRSPEAGLNRCTINIQRPKRFTQANKTSSGSFKKGFRK
GSEGLWSIGRSIGLGVSRAVFPEDLEVSEKKIFDPQDKFLLLCNKLFVASCILAVSVDPL
FLFLPFINDKAKCVGIDRKLAIVTTTLRTVIDSFYLFHMALRFRTAYVAPSSRVFGRGEL
VIDPAQIAKRYLQQYFIIDLLSVLPVPQIIVWRFLYSSRGANVLATKQALRYIVLVQYIP
RFLRMYPLSSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGALWYLLALERNNDCWSKA
CKDNDNCTRNFLFCGNQNMKGYDAWDDVKDPFLQLRCPVNVTEGEEPPFDFGIYLRALSS
GIVSSKKFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIVLAIAGLLLFALLIGNM
QTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVSN
LPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTEKSFLVREGDPVNEM
LFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALT
EVEAFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYTKRKKLE
ELRKEEEMEEESSTARLIAGGSSPFSIRATFLASRFAANALRGVRKNRTAKLLALSQPTK
ELLKVQKPPEPDFSADC
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggagtcaaaatctcaagtaatcagtggccatcgcgagaagttcatcaggttggatagt
atggacccaaggagtcctgaagcaggtctaaacagatgcacaataaacatccaaagacca
aaacgttttactcaagcaaacaaaacatcatccggttctttcaagaaaggcttcagaaaa
ggatccgaggggctttggtccataggcagatccataggactcggtgtctcccgcgccgta
ttcccagaagatctcgaagtttccgagaagaagatctttgatccgcaagacaagttcctt
ctcctctgcaacaagctcttcgtcgcttcttgcatcctcgctgtatccgtggacccgctc
ttcttgtttctccccttcatcaacgataaagccaaatgcgttggtatagaccggaagcta
gcgattgtgaccaccacgctgaggacggttatagattctttttatctctttcacatggct
ttgaggtttagaacagcttacgtcgctccttcgtcgcgtgtttttggtcgtggagagctt
gtgattgaccctgcgcagatagctaaacggtatctgcaacagtacttcatcatagacttg
ctctctgtgcttcccgttccacagattatagtatggaggttcctctacagttctagagga
gcgaacgttctggcaacaaaacaagcgcttagatacatagtgttagtccaatacattccg
cggtttcttcgtatgtatcctttaagttcagagctgaagagaaccgcaggagtgttcgcc
gaaaccgcttgggctggtgcagcttactacttgctactttacatgcttgcaagtcatatt
gttggagcgttgtggtatttgcttgccttagaacgcaataacgattgctggagtaaggcg
tgcaaagataatgacaactgtactagaaactttttgttttgcggtaaccaaaacatgaaa
ggttatgatgcttgggacgatgttaaagatccgtttctccagctgcgttgtcctgtcaat
gtcactgaaggcgaagagcctccctttgattttgggatctacttgagagctctctcctct
ggcattgtctcatctaaaaagtttgtctcaaagtacttcttctgcttgtggtggggacta
caaaatcttagcacgcttgggcaagggcttgaaactagcacataccctggagaggttata
ttctccatagtacttgctattgctggacttctactctttgccctcctcattggaaacatg
cagacttatcttcaatcgcttactatccggttagaagaaatgcgagtcaaaagacgcgac
tcagaacagtggatgcaccatcgaatgcttccacctgagctaagggaacgagtcagaaga
tacgaccagtacaagtggttggagacgcgtggagtcgatgaagagaatctcgtttccaac
ctccccaaggatctcagaagagacatcaaacgtcatctctgtctcgccttggtccgaaga
gttccattgtttgagaacatggacgagaggctgctagatgcaatctgtgagcggctcaag
ccatgtctatacaccgagaagtcgttcttggtccgtgagggagaccctgtgaacgagatg
ctcttcataatccgtggccggctcgagagtgtaacaacagacggtggaagaagcggtttc
tacaaccgcagcttacttaaagaaggagacttctgcggcgacgagcttctgacatgggcc
ctagaccccaaatcaggctctaacctaccgtcctcgacaagaaccgtcaaggccttgacc
gaagtagaagctttcgctttgatagctgacgagcttaagttcgtggcgagccagttcagg
agacttcacagcagacaagtgcagcacactttcagattctactcgcagcagtggaggact
tgggccgcttgctttatccaagctgcgtggcgacggtacacgaagaggaagaaactggag
gagcttaggaaagaagaggagatggaggaagagtcttctactgcgaggcttatcgcggga
ggtagtagtccttttagcatcagagcgacgttcttggcttcaaggtttgcagctaatgcg
cttcgtggtgttcggaagaaccggactgctaagctgttggctttgtcgcaaccaactaaa
gagttgttgaaagttcagaaacctcctgaaccagacttctctgctgattgctga
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