Brassica napus (rape): 106368660
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Entry
106368660 CDS
T04128
Name
(RefSeq) putative pectate lyase 14
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106368660
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106368660
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106368660
NCBI-ProteinID:
XP_048610680
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Position
C4:complement(40706632..40711942)
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AA seq
433 aa
AA seq
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MVIARTLSSVSATLIIILTLFVHVNGVQDTKELKPDQSSRTSMTDYEWHEHAVKDPEEIA
AMVDMKIRNSTERRRLGYFSCSTGNPIDDCWRCDKKWHRQRKRLASCAIGFGRNAVGGRD
GRFYIVTDPSDHDPIKPKPGTLRYAVIQDRPLWIVFKRDMVITLSQELIMNSFKTIDGRG
VNVHIAGGACITIQYVTNIIIHGINIHDCKRTGNAMVRSSETHYGWRTMADGDGISIFGS
SHVWIDHNSMSNCADGLIDAIMGSTAITISNNYFTHHNEAILLGHTDSYTRDKMMQVTIA
YNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAKE
VTKRVGAGKGEWNQWNWRSQGDLLLNGAYFTSSGAGASSSYARASSLAAKSSSLVGMLTY
SSGALECRIGTPC
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggtgatcgcaagaacattgtcttcagtctcagcaactctgatcataattctaacactc
tttgtccatgtaaatggagttcaagatacaaaggagttgaaacctgatcagagctcaaga
acatcaatgactgattatgaatggcatgaacacgccgtaaaagacccagaagaaatagca
gccatggtcgatatgaagatacgaaacagtacagaacgtaggaggttaggctacttctcc
tgctcaaccggaaacccaatcgacgattgttggcgttgcgataaaaaatggcatcgccag
agaaagcgtctagcgagttgcgccatcggattcggacgtaacgccgtcggaggccgagac
ggacgtttctacatcgtcacagacccatcggatcatgatccgattaaacctaaacccggt
acgctccggtacgcagtgatacaagaccgaccgctatggatcgtcttcaaacgcgacatg
gtcatcaccctaagtcaagagctcatcatgaatagcttcaaaacgatcgatggtcgcggc
gtgaacgtgcacatcgctggtggagcatgtattacgattcagtacgtaacgaacatcatc
attcacgggattaacattcacgactgtaagcgtactggtaacgccatggttagaagctcg
gagacgcattatggttggagaacgatggcggatggcgatgggatctcgatttttgggtcg
agccatgtttggattgatcataattctatgtcgaactgtgctgatggattgatcgatgca
attatgggatctactgctattaccatttcgaataactatttcactcaccacaacgaggct
attttgttggggcataccgattcctacaccagagacaaaatgatgcaagtgacaattgca
tataatcattttggggagggtcttatacagagaatgccaaggtgcaggcatggatacttc
catgtggtaaacaacgattacactcactgggaaatgtatgcaatcggtggaagtgcaaac
cctacaatcaacagtcaaggaaatcgattccttgccccgggaaaccgttttgctaaagag
gtgacaaagagggtaggtgcagggaaaggagaatggaaccagtggaactggagatcacaa
ggagacttattgctcaatggtgcttacttcacttcatctggagctggagcttcttcaagc
tacgctagagcctctagtttggctgctaaatcatcttcccttgtaggtatgcttacctat
agctctggtgccctggaatgcaggatcggtacgccttgttaa
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