Brassica napus (rape): 106370559
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Entry
106370559 CDS
T04128
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106370559
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106370559
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
106370559
NCBI-ProteinID:
XP_022549240
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Position
A10:complement(15658295..15660521)
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AA seq
499 aa
AA seq
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MEMARLLKLMCVFCIAGLIPTIKANISELDEYWSQRADEAREFTLQAYHSDPYEIVDHFH
ERHYDNSTDDTTTEEHSSNSTDVTATEEDNSNSTDVTATEEDSSTKPEEEGTEVIEMVGN
SKNSTRRSLKGKGKGKWSKLKGPCTASNPIDKCWRCRSNWANRRKKLAKCVRGFGHGTTG
GKRGRIYVVTSNLDEDMVNPIPGTLRHAVIQKEPLWIIFKNDMSIRLSQELLVNSDKTID
ARGADVHIAHGAGITMQFVRNVIIHGLHIHHISESNGGMIRDSVDHFGMRTRADGDGLSI
YGSSNIWIDHVSMSKCQDGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNNMNEADQKMQ
VTVAYNHFGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHL
PYYKEVTKRDYASEDEWKHWTWRSEKDIFMNGAFFRQSGDPHYKSAHTRKQMIKPKNGYA
VSKLTKYAGALDCRVGRRC
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atggagatggctaggttgttaaagttgatgtgtgtgttctgtattgctggtctgattccg
accataaaagccaacatttcggagttggacgagtattggtcacaacgagccgacgaagcc
cgagagttcactcttcaagcttatcattctgatccttacgaaatcgtggatcactttcat
gaacgtcactacgacaactctactgatgataccacgacagaggaacatagtagcaactct
actgatgttaccgctacagaggaagataacagcaactctactgatgttaccgcgacagag
gaagatagcagcacaaagcctgaagaggagggaactgaggtcattgaaatggtcggaaac
tcgaagaacagcactagaagaagcttaaaaggtaaaggcaaaggaaaatggagcaagctt
aagggaccgtgtacagcaagtaacccgattgataaatgctggcgttgccgttcgaattgg
gctaaccgtcgtaagaagcttgcaaaatgtgtccgcgggttcggccacgggacgaccggt
gggaaacgtggacgtatctacgtggttacaagcaacctcgacgaggacatggtgaaccct
ataccagggacattgcgtcacgccgtgattcaaaaggaacctctctggatcattttcaag
aacgacatgagcattcgtttaagtcaagagcttttggttaatagcgacaagacgatcgat
gcacgtggagctgatgtccatatcgcacatggcgcagggataacgatgcagtttgtgaga
aatgttattatccatggactgcacattcaccacatttccgagagtaacggtggtatgatc
cgagactcggtagaccattttggaatgaggactagagccgatggtgacggtctatctata
tacggctcgtctaacatatggattgaccatgtttcgatgtcgaaatgtcaagatggactc
attgatgccattgttggatccactgccattacaatctccaactctcacttcactcaccac
aacgacgtgatgttgcttggtgcgcaaaacaatatgaatgaagcggaccagaagatgcaa
gtcacagtggcttataaccattttggtaaagggcttgtacagaggatgccaaggatccga
tggggatttgttcacgttgtgaacaatgactacactcattgggagctttacgctatcgga
ggtagtcaagggccgactattctcagccacggaaaccgattcatagctcctccacactta
ccttattacaaagaggtgacaaagagggattatgcttcggaagacgagtggaaacactgg
acatggagatctgagaaagatatattcatgaacggagcttttttcagacaatctggggat
cctcattacaaaagtgctcacacgagaaaacaaatgattaaacctaaaaatggatatgct
gtttctaagctgaccaaatacgcaggagcacttgattgcagagtcggtagacgctgttag
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