Brassica napus (rape): 106370994
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Entry
106370994 CDS
T04128
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106370994
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106370994
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
106370994
NCBI-ProteinID:
XP_048613688
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Position
C5:complement(1520399..1529135)
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AA seq
431 aa
AA seq
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MAVLPTWILAMMCLLFFVGAIENSTQDKISSLSRSNENEWNAHAVTNPDEVADEVIALAE
MSVRNHTERRKLGYFACGTGNPIDDCWRCDANWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPNDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQYVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPKNPFAKEVTKR
VDTPASHWKGWNWRTEGDLLQNGAYFTASGAASSGSYARASSLAAKSSSLVATITNDAGA
LPCRRGRQCTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcttccgacatggattttagctatgatgtgtcttctcttcttcgtcggagca
atagagaacagtacacaggacaagatatcatctctctccagatcgaacgaaaatgaatgg
aacgcgcatgcagtgacaaatccagatgaagtagcggacgaagttatcgccttggctgaa
atgagtgtaagaaaccataccgagaggaggaagctaggttactttgcttgcggaacaggc
aacccgatcgacgactgttggagatgcgatgccaactggcacaagaaccgcaaacgccta
gcggactgtggaatcggattcggaagaaacgcgatcggtggacgagacgggcgtttctac
gtagtcaccgacccaaatgacgacaacccggttaaccctagaccgggaacactacgtcac
gccgtgatccaagaccgaccgctatggatcgttttcaaacgcgacatggtgattcagctg
aaacaagagctgatcgtcaacagcttcaaaacgatcgacggacgcggcgcaaacgttcac
atcgctaacggcggttgcatcacgattcagtacgtgacgaacgtcatcgtgcatgggttg
catattcatgactgtagaccgacgggtaacgctatggtgagaagctcagagacgcacttt
gggtggaggacgatggcggatggtgacgcgatttcgatctttggatcgagtcatgtttgg
attgatcacaactcgttgtctcattgcgctgatgggcttgtggatgcggttatgggctcg
acggctattaccatctctaacaaccatatgactcatcacaacgaggttatgttgctcgga
catagtgattcttacacaagggataaagccatgcaagttactattgcttataaccatttt
ggtgtcggacttattcaaagaatgccgaggtgccgacacgggtatttccatgtcgtgaac
aatgactacactcactgggaaatgtacgcgattggtggaagcgcagacccgacaatcaac
agtcaaggaaaccgctacgccgccccgaagaatccctttgctaaagaggtgactaagaga
gtggacacaccggcgagtcactggaaaggatggaactggagaacggaaggagatttgctt
cagaacggagcttacttcactgcttcgggagccgcttcatctggtagctacgcacgagcc
tctagcctcgcagctaaatcttcttcattggttgcaaccattactaacgacgctggagct
ctaccttgtcgtagaggacgtcagtgtacctcatag
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