Brassica napus (rape): 106371168
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Entry
106371168 CDS
T04128
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106371168
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106371168
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106371168
NCBI-ProteinID:
XP_013666657
UniProt:
A0ABQ8BLP4
A0A078IAT1
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Position
A10:complement(2379586..2382882)
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AA seq
431 aa
AA seq
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MYLIVPVDSNNEPFMHYIYTHASNPKSKHKLKLTQLTMTKSQITVAILFTLLTFIDVSTS
SSNVFNVVSFGAKPDGVTDSTAAFLKAWQAACVAAYSATVMVPAGTFLVKGITFTGPCKS
KLKFQVAGTVVAPADYWAFGNSGYWILFNRVSKMSLVGGTFDARASGFWACRKSGQNCPP
GVRSITFNAAKDVVISGVKSMNSQMSHMTLKGCTNVAVRNIKLVAPGNSPNTDGFGVQSS
TGITLTGSTVQTGDDCVSIGPGTRNFLISKLNCGPGHGVSIGSLAKTLNEDGVENVTVSN
SVFTGTTNGVRIKSWARASTGFVNKVFFQNLIMKNVQNPIIIDQNYCPTHQGCPTEHSGV
KISQVTYRNIQGTSATQQAMNLACSKTNPCTGITLQDIKLTYNKGTPATSYCFNAAGTNL
GVIQPTSCLNK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaatcgtacccgtagactccaataacgagccattcatgcactatatatacact
catgcatcaaaccccaaatcaaaacacaaactcaaactcacacaactaacaatgacgaaa
tcacaaattacagtagcaattctcttcaccctcctcaccttcatcgatgtctcaaccagc
tcctccaacgtattcaacgtcgttagcttcggggccaaacctgacggagtcacggactcg
acggcagcattcctcaaggcatggcaagcggcttgtgtcgcggcatattcagccactgtg
atggttccggctggtacgtttctagtgaaggggataacgtttacagggccatgcaagagc
aaactcaagtttcaagtagccggaaccgtggttgctccggcagattactgggcatttgga
aactccggctactggattctcttcaacagggttagcaaaatgtcacttgtcggtgggact
ttcgacgcccgagctagtgggttctgggcttgccggaaatctggtcagaattgtcctccc
ggtgttaggtccataacgttcaacgcggcaaaagacgtggtcataagtggagtgaaatcg
atgaacagtcagatgtcccatatgaccctcaaaggttgcaccaatgtggccgtccgtaac
atcaagctagtcgctcccggaaacagcccaaacaccgacggttttggcgttcaatcctcc
acaggaatcacactcaccggaagcacagttcagaccggagacgattgtgtttctatcggc
cctggcacccgcaacttcctcatctccaaacttaattgtggcccaggtcatggggttagc
attgggagcttggcaaagacattgaacgaagatggagtagaaaacgtgacagtatcgaat
tccgtattcaccgggacaacaaacggcgtaaggataaagtcgtgggcgagggcgagtact
ggattcgttaataaagtcttcttccaaaacctaatcatgaagaacgtccaaaaccctatc
ataatcgaccaaaactattgtcctacccaccaaggttgccctaccgagcattcaggggta
aagattagccaagtgacgtataggaacatacaaggaacgtccgcgacacagcaagcgatg
aatctggcatgcagcaagaccaatccatgcactggaatcacattacaagacattaagctt
acttacaacaaaggaactcctgctacttcctactgttttaatgctgctggaactaatctc
ggtgttattcagcctacgagttgtctaaacaaataa
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