Brassica napus (rape): 106371812
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Entry
106371812 CDS
T04128
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106371812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106371812
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106371812
mRNA cycle factors
Common to processing body (P body) and stress granule
106371812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Rhamno_transf
Motif
Other DBs
NCBI-GeneID:
106371812
NCBI-ProteinID:
XP_013667369
LinkDB
All DBs
Position
A10:complement(14050248..14055249)
Genome browser
AA seq
1032 aa
AA seq
DB search
MMTLQMDKNTASSPRERAKSIFDKTVELEIKRRKAAQARNPSDPNLWQQIRENYEAIVLE
DHTFSEEHNIEFTLWQLHYKRIEDFRSHINALLASSNSNAQNSKGPSMADRVANIKLQFR
TFLSEATGFYHEMILKIRSKYGLPLGYFSESQDSQNLADKDGKKFAEVQKGLVSCHRCLI
YLGDLARYKGLYGEGDSKNREHAAASSYYLQAASLLPGSGNPHHQLAIIASYSGDEFAAT
YRYFRSLAVETPFPTARDNLIVAFEKNRLSYAQLFAAPKDSPRRPTGKRRGKGQDNSSKK
DADVVAAPEKDKATSADEKLKAFCVRFVRLNGILFTRTSLETFSDVLASTSSSLRDLISS
SLKEEMSFGKDTSDSALFIVRLVTILIFSVANSKKEKEGQSYAEIVNRVELARNSLTASF
ELLGHVIEQCAQLSDPSSSYFLPGVLVFVEWLACCPDVAMGSDPDERRTAVRSSFWNQCV
VFFNQILSLGPIYIDDVEDESCFSNMSMYDERETENRLALWEDYELRGFLPLLPAQSILD
FSRRHSFGTESPKEKKARIKRILAAGKALTSVIKVDQSHVYFDSKKKKFLVGSEPSDDLL
DSHSSPAEADNALQDNQGMMNHITPVTQLYQQIHLGEEDDDEEIVFKPLVTEKRKGASDQ
IYVPNGGGFKNPDQVATVGDFKALSVSDAAFHENLLLQARGNASIQLPASVGSNLLAHLL
PSTQSQGVQLQQVQTQAVHPQPSQSLASARLQPMQSPVAQQSQAALLQQLQSRAMHFQHP
QGQVPHVSLAQSQPASLGVSKWLPEEAANSLSGFAQMGNGHVMRNEMQGNHGVSYYPAHS
LPIHQSFNVNGMAGMPYSQSRTPEAMLPPIIDTFSSSGIISNGLGVQSSLARKSPIGRAS
KHLGPPPGFNSVPSKLQKEPTPGPDMSGSTLPADDYSWLDGYQGQSHQGTGFNSSLNYGS
SGKPEHMGTSNGLNGPANFPFPGKQAPASQVQAKFPYFQHPQEDNFVNGNDQSAQLPQQY
PGHPSWSGHRFV
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgatgactttgcagatggataagaatactgcttcctccccaagggagcgagccaagtcc
atattcgataagactgttgagttagaaatcaagcgtaggaaggctgctcaggctcggaat
ccttctgacccgaacctgtggcagcaaattcgtgagaactatgaagcaatcgttcttgaa
gatcacacattttctgaggagcacaacattgagtttactctgtggcagctgcattacaaa
cggattgaagactttagatcacacatcaatgctctcctggcttctagtaactcgaatgct
caaaattcaaagggtccatctatggctgaccgggtcgcaaatatcaagctccagttcaga
actttcctttcagaggcaactgggttttaccatgaaatgatcttaaaaattagatcaaag
tatgggcttcccttgggttatttttcggagagtcaagatagtcaaaatttggctgataag
gatggaaagaagtttgcagaagttcaaaaaggcttggtatcttgtcaccgttgcttaata
taccttggtgatcttgctcggtataaaggattgtatggagagggggattccaagaaccgt
gagcatgctgctgcctcgagttactatttgcaagcagcttctctattgccaggcagtgga
aacccacatcatcagcttgctataattgcttcctattccggggatgagtttgcagcaaca
tatcgttatttccggagtttggctgtggagactcctttcccaactgcccgtgacaacttg
attgttgcttttgaaaagaatcgtctgagttatgcccaattgtttgcggctcccaaagac
tcacctagaaggcccactggtaaaagaagaggtaaaggccaagataattcatcgaagaaa
gatgcggacgtggtagctgctcctgagaaggataaagcaactagtgcagatgagaagctc
aaagcattctgcgttagatttgttcgtctaaacgggattctttttaccagaacaagcctg
gagacattctcagatgttcttgcttccacaagcagcagtctacgagatctgatttcttcg
agcttaaaggaagagatgagttttggtaaagacaccagtgacagcgcactttttattgtt
aggctcgtgaccattcttatatttagcgtcgctaactcgaagaaagaaaaggaaggtcag
tcatatgcagaaattgtgaatcgtgtggagctcgcgagaaactccttaacagcaagtttt
gagttacttgggcacgtaatagagcagtgtgcgcaactgagtgatccttcgtcaagttac
ttcttgcctggtgtcttagtttttgttgagtggttggcctgctgtcctgatgttgcaatg
gggagtgatccggatgaaagacggactgctgtgagaagcagcttttggaaccagtgtgtt
gtcttcttcaaccaaatcttgtctcttgggcctatatatattgatgatgttgaagatgag
agttgcttctcgaacatgagcatgtatgacgaaagagaaactgaaaacagacttgcactg
tgggaggactatgagttgagaggattcttgccattgcttccagctcagtctattctcgac
ttttcaagaagacattcctttggaactgagagtcccaaggaaaagaaagctcgtataaag
aggatcctagcagccgggaaagcattgaccagtgtgatcaaggttgatcagagtcatgtg
tattttgattcaaagaagaagaaatttcttgttggctctgaaccgtcagatgacttgctg
gattctcattcaagcccagcggaagctgataatgcgttacaagataaccaaggaatgatg
aatcatataacgccagtgacgcagctatatcagcagattcatttgggtgaggaggatgat
gatgaagaaattgttttcaaacctctggttactgagaagaggaaaggggcttctgaccaa
atatatgttcctaatggaggaggcttcaagaatcctgatcaagttgctactgtgggggac
ttcaaagctttgagtgtttcagatgcagcttttcatgaaaatctccttctccaggcaaga
ggcaacgcaagtattcaactgcctgcatctgttggttctaaccttctggcacaccttctg
ccgtcaacacagtcccagggtgtgcagttgcaacaggttcagacacaggcagtgcatcct
cagccatctcaatcgctagcctctgcacgacttcagccaatgcaatcaccggtggcacaa
caatcgcaggccgcactacttcaacaattgcagtcacgggctatgcactttcaacatcct
caaggacaggttccacatgtttcactggcccaatcacaacctgcttcactcggtgttagc
aagtggttaccagaagaagctgctaatagcctatctggttttgctcagatgggtaacggt
catgtgatgaggaatgagatgcaaggaaatcatggagtctcctattaccctgcacactca
ctgccgatccaccagtctttcaatgtcaatggtatggctggtatgccatattctcagtca
cgaacacctgaagctatgctgccacccataattgatactttttcatcttctggaattatt
tctaatggccttggcgtgcaatcttcgttagcaagaaaaagtccaatcggtagagcctcc
aagcatcttggcccaccccctgggtttaactcagtcccctctaagctgcaaaaggagcca
acacccggtccggatatgtctggcagcactctaccggctgatgattacagctggttggat
ggataccaaggccagtctcaccaaggcactggtttcaacagttctttgaattacggttct
tctgggaagccagaacacatgggtaccagcaatggactgaatgggcctgccaactttccg
ttccctggaaaacaagctccagcgtcacaggtccaagcaaaatttccatactttcagcat
cctcaggaagataactttgtgaacggaaacgatcagtcagctcaactcccccagcaatat
ccaggacatcccagttggtcgggtcatcgctttgtgtga
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integrated database retrieval system
