Brassica napus (rape): 106371983
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Entry
106371983 CDS
T04128
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
bna
Brassica napus (rape)
Pathway
bna03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106371983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106371983
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106371983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Utp13
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_Nup120_160
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_WDR75_2nd
Beta-prop_HPS5
PROPPIN
WD40_like
Beta-prop_Vps41
KNTC1_N
Ge1_WD40
Beta-prop_RIG_1st
Nbas_N
Beta-prop_NOL10_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
106371983
NCBI-ProteinID:
XP_013667559
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Position
A10:15075065..15079956
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AA seq
868 aa
AA seq
DB search
MAPQSLKKNYKCSRSLKQFYSGGPFIVSSDGSFIACACGEAINIVDALDSSVKSTIEGES
DTLTALALSPDDKLLFSAGHSRQIRVWDLETLKCIRTWKGHEGPVMGMAVHASGGLLATA
GSDRKVLVWDVDGGFCTHYFKGHKGVVSSILFHPDADKNILISGSDDATVRVWDLLAKNT
EKKCLAILDKHFSAVTSIALSEDGWTLLTAGRDKVVNVWDLHDYSCKTTVATYEVLEAVT
PVSSGTPFASFVASLDKKGKKKKTPSQETHFITLGERGVVRIWKSEGSVCLYEQKSSDIT
VSSDDEESKRGFTAAAMLPSDRGLLCVTADQQFFIYSVVENAEESELVLSKRLVGYNEEI
SDMKFLGDEEQFLAVATNLEEVRVYDVETMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVT
GSKDKTVRLWNATSQSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGISE
DSEDPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTLKGHK
RRIFSVEFSPVDQCVMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSC
GADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMVATGGGDAVINLWHDSTASDKE
DEFRKEEETILRGQELENAVLDAEYTKAIRLAFELRRPHKVYELFAGLCKKRESDDQIVK
ALQGLEKEEFRLLFEYLREWNTKPNRCHIAQFVLYQTFNILPPTEIVQVKGIGELLEGLI
PYSQRHFNRMDRFVRSSFLLDYTLGEMSVIDPETETEYRKDKKMEEVKVIASVSAMEQDS
EGVDQKTPSRKRKSQKSKDKSNKKRLVA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggctcctcagtcgttgaagaagaactacaagtgctctcgttctctaaagcagttctac
agcggcggtcctttcatcgtttcgtctgacggttcttttatcgcctgcgcttgtggtgag
gccattaacatcgtcgacgcgttggactcgtcggtgaaatcaacgatcgaaggagagtcg
gatacgctcactgctctggctcttagtcctgatgataagctgctattctccgctgggcat
agtaggcagattcgagtttgggatttggaaacgttgaaatgcattcgcacttggaaggga
cacgaggggcctgtgatgggaatggctgtccacgcgtctggtggattgttagctacggct
ggatctgataggaaagtgcttgtttgggatgttgatggaggtttctgcactcattatttc
aaaggtcataaaggagttgtttcaagtatcttgttccatcctgatgctgacaaaaacatt
cttatatcgggaagtgatgatgctaccgttcgtgtctgggatcttttggcgaagaatact
gagaagaaatgtcttgccattttggataagcacttttcagctgtgacttccattgctctg
tcagaggatggatggactttactcactgctggaagagataaagttgtgaatgtgtgggac
cttcatgattatagctgcaagactacagttgcaacttatgaggtactagaagctgtgaca
ccagtttcttctgggactcctttcgcttcatttgtagcttctcttgataagaagggtaag
aagaagaaaactccttctcaagaaacgcattttattactctcggggaacgtggtgtagtg
cgcatttggaagtctgaaggttcagtttgcctctacgagcagaagtcgtcggatatcact
gtcagttcggatgatgaggaatctaaaagagggttcactgcagctgctatgttgccttct
gatcgtggactgctttgtgtgactgctgatcagcagttttttatctactccgttgtggaa
aatgcagaagaatcagaattagtgctaagcaagaggcttgttggatataacgaagaaata
tctgatatgaagttcctaggtgatgaagaacagttcctcgcagtagctacaaatctcgag
gaggttcgtgtttatgatgtagaaacaatgtcatgttcgtacgttttagctggccataaa
gaagttgttctgtcccttgacacatgcgtatctagttctgggaatgttctaatcgtgact
ggaagtaaagacaaaactgtaaggctatggaatgcaaccagccaatcttgcattggagtt
ggtacaggtcataacggagatatcttagcggttgcttttgcgaagaaatctttcagtttc
tttgtcagtggcagtggtgatcgtacactgaaggtctggagccttgatggcatctcagag
gactccgaagatcccattaatctgaaaactagaagtgttgttgctgcccacgataaagac
atcaattccgtggctgttgctcgtaatgatagcttggtttgcactggctctgaggatcgg
acagctagcatatggaggctaccagacttggtgcatgtcgttacgcttaaaggacataag
aggcggattttttctgttgagttctcgcctgttgatcaatgcgtaatgacagcatcaggt
gataaaacagtaaaaatttgggctatatctgacggttcatgcctcaaaacattcgaaggt
catacctcaagtgtccttagggcctcattcataactgacggcacccaatttgtctcatgt
ggtgccgatggtttattgaaactttggaatgtgaacactagtgaatgcattgccacatat
gaccagcacgaggacaaggtgtgggctttagctgttggaaagaaaacagaaatggttgct
actggtggaggggatgcagttattaatttatggcatgattccaccgcttctgataaagaa
gacgaattccggaaagaggaagaaacaatcttgagaggtcaggagctggaaaacgcggta
ttagatgccgaatacactaaagccataagattagcatttgagcttcgtaggcctcacaaa
gtttacgaactctttgctggcctctgcaagaaaagagaatcagatgaccagatagtgaaa
gctcttcaaggacttgaaaaagaagagttccgtctactttttgaatatctcagagaatgg
aacacaaaaccaaaccgatgccacattgctcagtttgttctttaccaaaccttcaacata
cttcctcccacagaaatcgttcaggtaaaaggaattggagaactcctggaaggtttaatc
ccatattctcagagacatttcaataggatggacagatttgtaagaagcagtttcttgtta
gactacacactcggtgagatgtctgtgattgatccagagactgagactgagtatcgcaag
gacaagaagatggaagaagtaaaggtcatcgcttctgtgtctgcaatggaacaagactcg
gaaggagtagaccagaagacaccttcgaggaaacgaaagtctcagaaatcaaaagataaa
tcgaacaagaagagactcgttgcataa
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