Brassica napus (rape): 106372161
Help
Entry
106372161 CDS
T04128
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106372161
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
106372161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
IFRD
zf-HC5HC2H
PHD_4
zf-RING_16
PHD-1st_NSD
Motif
Other DBs
NCBI-GeneID:
106372161
NCBI-ProteinID:
XP_048598246
LinkDB
All DBs
Position
A10:15508335..15518351
Genome browser
AA seq
1846 aa
AA seq
DB search
MSNPSSSGWDSSSNLTQFGIGLANTVQSDVASHLPLPSLPIFCGSTQPGEFKLFDEVGEG
VGGNRSLNRSEILSQSRRIANMLEETDVSYLDLRNEARALNCNSVEPLQLYDQVLRCNPG
AFEYATPGPTCEPVGTDEEPQQRSSEPSVPVKFQRQADHHLGGSIEPEPVKKVLRSNHAE
DHNWHSKPLINQSPRDDITTLDSRPETVTMNESSASKKSKGKKKRKDGAGPGASSVQPDS
SVLQESIVKSFCEMLEDFCGRAEIPGDDRDGAEWSVVPVDEVRVLVAELMTIRSKMLLHM
VPVDILSRLLHTLDHQIHRAEGLSINSEHSDSYSVGLVLGALESIHASLAVMANSDMPKQ
LYKEEVIERILEFSRHQMMAVMSAYDPSYRSASKPADNVAFEGDDDDDPDPDMSSASKRR
RTGKSGKVKKSGVNRISGAVNTALQKLCTILCLLKDLLFVERLSDSCILQLLKTSTTTFL
VENIQLLQLKAISLIGGIYNSYAQHRTYVIDELSQLLWKLPSSRRVLRTYLLPDEEQKQI
QMVTALLIQLVHNSTSLPETLRQASCANSILETPVDDDYLTKCHEAVTETCCLFWTRVLE
RFASAKAQDASEIKMMIENLVNDLLTALNLPEYPSVSPILEVLCVILLHNGGLKSKDVSA
RSMAIDLLGTIAARLKQDSVLCSGDRFWALLESDTETKLDQSVTKDCALCLGKRAGNLLG
CQICQRRFHADCLGLKEVDIPSRNWHCPFCISKRQLLVLQSYCKMDTKGTVMLESEEDPN
MVTQTEVVQQMLLNYLQDAGSVDEVHTFICWFYLCLWYKDVPKSQKKFKYYIARLKAKSI
IRNSGATTSFLTRNAIKKITLALGLNSSFSRGFDKILHMLLASLRENSPVIRAKAMRAVS
IIVEADPEVLCDKRVQLAVEGRFCDSAISVREAALELVGRHIASHPDVGLKYFEKVAERI
KDTGVSVRKRAIKIIRDMCTSNPNFSEFTSACAEILSRISDDESSIQDLVCKTFYEFWFE
EPPGHHTQFASDASSIPVEVETKTKQMVGLLRRTPNHQLLVTIIKRALALDFLPQATKAA
GINPVALASVRRRCEMMCKCLLENILQVEELSRGEGDVQVLPYVLALHAFCLVDPGLCTP
ASDPTKFVITLQPYLKSQVDSRIGAQLLESIIFIIDSVLPMIRKLPFSVTEDLEQDLKHM
IVRHSFLTVVHACVRCLCSVSKLSGKGVSVVEHLLQFFLKRLEAQGPDNNQIAGRSLFCL
GLLIRHGNSLISTSGGRKFNLSGCLSLFKRHLRVEDFSLKVRSLQALGFILIARPEYMLE
DDIGKIIESTLSDEANGRMKMQALQNMYDYLLDAEKQLGSDKAGDITVNPIEQGGHTVPV
AAGAGDTNICGGIVQLYWDKILGRCLDFDDQIRQIALKIVEVVLRQGLVHPITCVPYLIA
LETDPLEANQKLAHHLLMNMHEKYPAFFESRLGDGLQMSFIFMQSISHVSSESNQNLQQK
GSTNMSGKNDHTNTTLTQARLGVSRIYKLIRGNRISRNKFMTSIVRKFDNPTWSGSVISF
LMYCTETLALLPFTTPDEPLYLVYSINRVIQIRAGAIESNLKALLHKDSAKPQHGNGTYQ
QDPIPGQIHMMDLNTRIQEEPTHWNSYGQVDLNGIVYQDPRDQFNSYQIHNGEANVNKMT
SSDPPALSTDDLQKIQVDCLSAIALQLLLKLKRYLKVTYSLNDDRCQAYSPTEPLKPGDP
LSKQNVAFDLSETRTDLPSTYQDLVLRYQEFKNAMREDTLDYTIYSSNVKRKRPTPRKSS
RSAKKAVAYNEDDDDDDDGDRGWNGGGSSGMTSRRLNYSTRNSNRR
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacccaagcagttcgggatgggattcaagttcgaatttgactcagttcgggatc
ggtttggccaatacagtgcaatcggatgttgcttctcacttgccgctcccctcgttaccc
atattctgcggctcgactcagcctggggagttcaagctgttcgatgaggttggcgaaggt
gttggcggcaacaggtcgttgaaccgcagcgagattctctcgcagtctaggagaatcgcg
aatatgcttgaagaaactgacgtttcttatttggatcttagaaacgaggctagagcgctg
aactgtaattctgtggagcctttgcagttatatgaccaagttctacgatgcaatcctgga
gcatttgagtatgccacccctggtccgacctgcgaaccagtcggtaccgatgaagagcct
caacagagaagttctgagccaagtgttcctgtcaagtttcaacgacaggccgatcatcat
ctaggtgggagtatcgagcctgagcctgtgaaaaaggtattacgatcaaatcatgctgaa
gatcataattggcattccaaacctttgataaaccagtcaccaagagatgatattacaact
cttgactctcgacctgaaacggtcaccatgaatgaatcttctgcttcgaagaagtcaaag
ggcaagaagaaacgtaaagatggcgctggccctggcgcgtcttcagttcagccagattca
tccgtgcttcaagagtccatcgttaaaagcttttgtgagatgctggaggacttctgtggc
agagctgaaatccctggtgatgatagggatggagcagagtggtcagtagtgcctgttgat
gaagttcgtgttcttgtggctgagttgatgactataaggtcaaaaatgcttttgcatatg
gtacctgttgatattctgtcgaggttattgcacactctggatcatcagatacatagggca
gaaggcttgtccatcaatagtgagcattcagattcatattcagtggggttggttcttggt
gcccttgagtccatccatgcatcgcttgcagtgatggcaaacagtgatatgccaaagcaa
ctctacaaggaagaggtaattgagagaattctggagttttctaggcaccaaatgatggct
gttatgtctgcttatgatccatcataccgcagcgcaagtaaaccggcagataatgtggca
tttgaaggtgatgatgatgatgatcccgatcctgacatgagctcagctagtaaaaggcga
cgaacgggaaaaagtggcaaagtgaaaaagtcgggagtgaacaggatctctggagcagtg
aatactgcattacagaaactttgcactattctttgcttactcaaggacctgttgttcgta
gaaaggctgtctgacagttgcattttacaactgttgaagacgagtactacaacatttttg
gtggaaaatatccaacttctgcaactcaaagcaattagcttaattggtggtatatataat
tcatacgctcaacaccgaacgtatgtgatagatgagttatctcaattgctatggaagtta
ccttcctcaagacgagtgctgagaacgtatcttctccctgatgaagaacagaagcagatt
caaatggtcacggctttactcattcagttggttcacaacagcacaagccttcctgaaaca
ctgagacaggcttcatgtgcaaactccatactggagacgcccgttgatgatgactaccta
actaaatgtcatgaggcggttacagaaacatgttgccttttctggactcgtgtccttgaa
cgatttgccagtgcaaaggctcaagatgcctctgagataaaaatgatgattgagaacctt
gttaatgatttactgacagcattgaatcttcctgaatatccatcagtgtctccgattctt
gaggttctctgcgtcatacttctgcataatggagggttgaaatcaaaagatgtctctgcc
cggtcaatggccatcgacttgctaggtacaattgctgcaaggttgaaacaggattctgtc
ctctgcagtggagacagattctgggcgctactagaatcagatactgaaaccaaacttgac
caatctgttacaaaagattgcgctctatgtttaggtaaaagggctgggaacttattaggc
tgtcaaatttgtcaaaggcggtttcatgcagactgtttgggtttaaaggaagtagacatt
ccaagtcgaaattggcattgtccgttttgcataagcaagagacaacttcttgtactgcag
tcttactgcaagatggacaccaagggcactgttatgttggagtcagaagaagatccaaat
atggttacacagacagaagtggtgcaacagatgctcttaaattatcttcaggatgctgga
tctgttgatgaagtgcatactttcatttgctggttttatctttgcctttggtataaagat
gtcccaaaatctcagaagaaattcaaatattacattgccagactcaaagcgaagtcaata
atccgtaactctggagcaactacttcgttcttgacaagaaatgctattaagaaaattact
ttagctcttggacttaacagctctttttctagaggatttgataagattctacacatgctc
ctggctagtttaagagagaactctcccgttattagggccaaagctatgcgagcagttagt
ataattgttgaagctgatccggaggtattgtgtgataagcgtgttcagttggctgttgaa
ggaaggttctgtgattctgcaatatctgttagagaagcggcactggaacttgttggtagg
catattgcatcacatcctgatgttggtttaaagtattttgagaaggtagctgaaaggata
aaggatactggagtgagtgttcgaaaacgagccatcaagataatacgtgatatgtgtact
tcaaatcccaacttctctgaatttacaagtgcatgtgccgagatattatctcgtatcagt
gatgatgagtctagtatacaggatcttgtgtgcaaaactttctatgaattctggtttgag
gagcctccagggcatcatactcagtttgctagtgatgctagctccattccagtggaagtg
gaaacgaaaactaagcaaatggtggggttgttaaggaggaccccgaatcaccagcttctt
gtaacaattattaagcgtgccctggcccttgattttttgcctcaagcaactaaagctgct
ggtatcaacccagttgctcttgcatcggtacgccggcgctgcgagatgatgtgcaagtgc
ttactggaaaatatattacaggtagaagaactgagccgtggagagggagacgtgcaagtg
cttccttatgtacttgctttgcatgctttctgtctggtggatcctgggctgtgtacaccg
gcttcagaccctacgaagtttgttattaccctacagccgtatttgaagagtcaggttgat
agtagaataggagcacagttactagagagtattattttcattatcgattctgttctaccc
atgatccgcaagcttccttttagtgtcacagaagatctggagcaagatctaaagcatatg
attgttcggcattcatttctaacggttgttcatgcatgcgttaggtgtctttgttctgtg
agtaaattgtcgggaaaaggtgttagtgtagttgagcatcttcttcagttctttttaaag
cggctggaggcccaagggcctgataacaaccagattgctgggcggtcccttttttgtctt
ggcttgcttattcgccatggaaactctcttattagcacctcaggtggcaggaaatttaat
ctctccggctgtctcagtttgttcaaacgacatcttcgcgtggaagatttttcgttgaaa
gtcaggtctctgcaggctctaggttttattctaattgcgcggcctgagtacatgttggaa
gacgacattggaaagataatcgagagtacgttatctgatgaagcaaacgggcgtatgaag
atgcaagcattgcaaaacatgtatgattaccttcttgatgcggaaaaacaattgggatcc
gataaagctggtgatatcacggttaacccaattgagcaaggtggacatactgtacctgtg
gccgctggtgcaggtgacaccaacatttgcggaggcattgtgcagttgtattgggataag
atattaggtagatgcttggactttgatgatcaaattcgccagattgctctcaagatagtg
gaagttgtgctacgtcaaggtcttgttcatcctattacatgtgttccttatttgattgcc
ctggagacagatcctctggaggccaaccaaaagctggcccatcatttactaatgaatatg
catgagaagtatccggcattttttgaaagccgtctcggtgacggacttcaaatgtcgttc
attttcatgcaatcgataagccatgtctcttcagaatcaaatcaaaatcttcagcagaag
ggttcaacaaacatgtcgggaaaaaatgatcatactaatactactctcacacaagctaga
cttggagtctctaggatctacaagcttatccgtggaaaccggatttctcggaacaagttt
atgacatctattgttcgcaagtttgataatccaacctggagtggctcagtgatatccttt
ctgatgtattgcactgaaacccttgcgttacttccattcacaacacctgatgagccgctc
tatcttgtatattccataaaccgagttatacaaatccgggctggtgcaatcgagtcaaat
ttgaaggctttgttacacaaagattccgcaaagcctcagcatggaaatggaacgtaccaa
caagatccgattcctggacagattcacatgatggacttgaacacaagaatccaagaagaa
ccaacgcattggaattcgtatggtcaagttgatctcaatggaattgtataccaagatccg
agggatcagtttaattcatatcaaatccataatggggaagcaaatgtgaacaaaatgaca
tcatccgatcctcctgcattgtccaccgatgatctgcagaaaattcaggttgattgctta
tcagctatagctttacaacttcttttgaagctcaagagatacttaaaagtcacgtacagc
ttaaatgatgaccggtgccaagcctattctccaacggaaccattgaaaccaggagatcct
ctgtccaaacagaatgttgcctttgacctcagcgaaactcgtactgacttgccttcaaca
tatcaagacttggttctgagatatcaggagtttaagaacgcgatgagagaagatacactt
gactacaccatttattcatcaaacgtcaagagaaaacgcccaacaccaagaaaaagctca
agatctgctaagaaagcagtagcctacaatgaggacgatgatgatgacgacgatggtgac
agaggctggaatggaggaggaagcagtggtatgacttctcggagactaaactacagtacc
agaaatagcaacagaaggtga
DBGET
integrated database retrieval system
