Brassica napus (rape): 106372426
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Entry
106372426 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106372426
09122 Translation
03013 Nucleocytoplasmic transport
106372426
03015 mRNA surveillance pathway
106372426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106372426
03041 Spliceosome [BR:
bna03041
]
106372426
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106372426
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106372426
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106372426
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106372426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
106372426
NCBI-ProteinID:
XP_013668088
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All DBs
Position
A10:16811080..16814416
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AA seq
427 aa
AA seq
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MGDVRDNEVYEEELLDYEEEDEKLLDSATKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKDLLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AGELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQARFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgttagagacaacgaagtctacgaggaggagcttctggactatgaggaagag
gacgagaaacttctagattctgctactaaagtaaatggcgatgccgtgaagaaaggttat
gttggcatacacagttctggattcagagacttccttttgaagccggagcttctccgagct
attgttgactctggatttgagcatccatccgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagcaaaatctggtatggggaagactgccgtcttt
gtgctttcgactctgcaacagatcgagccatctcctggccaggtgtccgccctaatcttg
tgccatacaagggaattagcttaccagatctgcaatgagtttgtgcgattcagtacctat
ctgcctgatacgaaggtttcagtgttctatggaggagtcaacaataaaattcacaaagac
ttgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgggtccttggactc
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgacgaatgtgat
aaaatgctcgagtctctcgacatgaggagggatgtgcaggagattttcaagatgacacct
cacgataaacaagtcatgatgttctcagcaacgctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaaactgactctt
catgggcttgtccagcactacatcaaactgagcgagatggagaagaaccgcaagttgaat
gatcttcttgacgcattggacttcaatcaagttgtcatatttgtgaagagcgttagcaga
gctggggagctgaacaagttgcttattgaatgcaatttcccctcaatatgcattcactct
ggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaaggacacaagaga
attctagtggcgacagacttggtagggagaggcattgacattgagcgtgttaacattgtt
atcaactacgacatgccagattctgctgatacatatcttcatagggtcgggagagctgga
aggtttggaacaaagggtcttgcgatcacgtttgtggcatcagcttcagactcggaagtt
cttaatcaggtgcaagccaggtttgaggttgatataaaggaacttcctgaacagattgat
acttccacatacatgccctcttaa
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