Brassica napus (rape): 106372536
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Entry
106372536 CDS
T04128
Name
(RefSeq) probable pectate lyase 18
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106372536
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106372536
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Hyphal_reg_CWP
Motif
Other DBs
NCBI-GeneID:
106372536
NCBI-ProteinID:
XP_048598592
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Position
A10:18907887..18913004
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AA seq
524 aa
AA seq
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MVAHKRFHIIQKPSCIWIIWFCLLVSLSRHGRASYSLSSSASTSTSSFNLSLPHQHPFPE
DIVLNVQRKLNDSLHRRNLLTYQQGDGDTTASAPIPSCITGNPIDDCWRCDPNWSQNRQR
LADCSIGFGQGTLGGKGGRFYLVTDSSDDDAANPTPGTLRHAVIQAEPLWIVFSGDMGIR
LRHELIVGSYKTIDGRGANVQITGHGCLTIQQVSHVIIHNVHVHHCKPSGNTLVASSPTH
VGFRGVSDGDGISVSASHHIWVDHCSLGYCSDGLIDVILASTAVTISNNYFHHHDEVMLL
GHDDRYTADTGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSANPTI
NSQGNRYTAPINPNAKEVTKRVDTNEKHWGKWNWRTDGDVMVNGAFFVPSGDGVSLAYAR
ATSLQAKAAGFIDQLTVNAGVFGDPSGRNGQGGGFPGITDGGGTITRGYSKGGPDGGGSD
SDGGIFSMIFGSNTNAAAAALRPGQVWWILFTILLNWYFSNHRR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggtggctcataagaggttccatattattcaaaaaccatcatgcatttggataatctgg
ttctgcctcttggtttctctctctcgccatggaagagcatcttactcattatcatcatca
gcctcaacctcaacatcttccttcaatctttccctcccacaccaacacccattccctgaa
gatattgttcttaatgtccaaaggaagctcaacgattctctccacagaagaaacctcctc
acttaccaacaaggcgacggcgacacgacggcctcggcgccaataccttcttgcatcacc
ggaaacccaatcgacgactgctggcgctgcgacccaaactggtctcaaaaccgccagcgc
ctcgccgactgctccatcggcttcggacaaggcacgctcggcggcaaaggcggccgcttt
tacctcgtcaccgactcctccgacgacgacgcggcgaacccgacccccggaaccctccgc
cacgccgtgatccaggcggagcctctctggatcgtcttctccggcgacatggggatcaga
ctacgacacgagctcatcgtcggaagctacaaaaccatcgacggacgcggcgcgaacgtg
caaatcaccggccacggatgcctcacgatccagcaggtgagccacgtcatcatccacaac
gtccacgttcaccactgcaagccctccgggaacactctggtcgcttcgtcgccgacgcac
gtcgggttcagaggagtctccgacggagacgggatctccgtctccgcttcgcatcacatt
tgggtcgatcactgctctttagggtactgttccgacggactcatcgacgtcatccttgcg
tcaacggccgttactatctccaacaactactttcatcatcacgacgaagttatgctctta
ggccatgacgaccgttatacggcggatacggggatgcaggtgacgattgcgttcaatcat
ttcggagaggggctcgtgcagaggatgccgcggtgtagacatggttatattcatgtggtg
aacaatgatttcactgcatgggagatgtatgctattggtggaagtgctaaccctacgatc
aatagtcagggtaatcgttacaccgcacccattaatcctaatgccaaagaggtgacgaag
cgagtggacacaaacgagaaacactgggggaaatggaactggaggacggacggagacgtt
atggttaacggagcgtttttcgtgccgtcaggtgacggagtcagcctagcttacgcccga
gccactagtcttcaggcaaaagccgctggattcattgaccagctaacggtcaatgccggc
gttttcggcgatcccagtgggagaaacggccaaggaggaggttttcccggaatcactgac
ggtggtgggaccatcacacgcggctacagtaaaggtggacccgacggtggcggcagcgac
agcgatggtggcattttctcaatgatattcggtagtaatacaaatgcggcggcggcagct
ttgaggccgggacaagtctggtggattttgttcactatcttattaaattggtatttttca
aaccataggagatga
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