Brassica napus (rape): 106373695
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Entry
106373695 CDS
T04128
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106373695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106373695
03041 Spliceosome [BR:
bna03041
]
106373695
03009 Ribosome biogenesis [BR:
bna03009
]
106373695
03016 Transfer RNA biogenesis [BR:
bna03016
]
106373695
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106373695
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106373695
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106373695
Complex C
U4/U6.U5 tri-SnRNP related factors
106373695
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
106373695
Transfer RNA biogenesis [BR:
bna03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106373695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
MTR4-like_stalk
DSHCT
Helicase_C
APG6_N
Motif
Other DBs
NCBI-GeneID:
106373695
NCBI-ProteinID:
XP_048600866
LinkDB
All DBs
Position
C1:complement(31502738..31506500)
Genome browser
AA seq
764 aa
AA seq
DB search
MNSETVWFNYGDVILVLLLQVHKQPCHIVYTDYRPTPLQHYVFPAGGSGLYLVVDEKAKF
HEDSFQKSLNALVPANDGDKKRENGKSQKGLILGKLGEESDIFKLVKMIIQRQYDPVILF
SFSKKECEALAMQMSKMDLNSDDEKDSVETIFTSAIDMLSDDDKKLPQVSNILPILKRGI
GVHHSGLLPILKEVIEILFQGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLS
SGEYIQMSGRAGRRGVDKRGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNMLLNQ
LRSEDGDPENLLSNSFFQFQADRAIPDIEKQIKALQEERDSMVIEEEESLRNYYNLILQY
KSLKEDIREIVFSPKYCLPFLLPNRAVCLDCPSDNGEQQSFSIEDQDAWGVIMKFNKVKS
LSEEILTVDVLTRCLVSRDGAGKKKIKPVPFKERGEPVVVSVPLSQVKSLSSAIMNIPKD
YLQLEARENALKKVSELLSRHPDGIPLDPEVDMKIRISSYKKTVRRLEALENLFEKHKIA
KSPLIAQKLKVLHMKEELTAKIKSLEKTVRSSTALAFKDELKARKRVLRRLGYITSDNVV
ELKGKVACEISSAEELTLTELMFSGVFKEAKVEELVSLLSCFVWRERLPDAAKPREELDL
LFIQLQDTDRRAAEVQLTLFSPTHPRRFGSITVLSDNVAGRYRRREFCAFVQTGYNGGGV
CVGKRLQVLRDHGDCSCFRRELDQSDKENGGSSTTAHRSCKIHR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagagactgtctggttcaactatggagatgtgattttagtgttgttattgcag
gttcacaaacaaccatgccatattgtttacaccgattatcggccaactccgcttcagcac
tatgtctttcctgccggagggagtggcctttacttggttgtggatgaaaaggctaaattc
catgaggatagctttcaaaaatctcttaacgcacttgttcctgctaatgatggtgacaag
aaaagagaaaatgggaaatctcaaaagggcttgatacttggaaaacttggtgaagaaagt
gatatcttcaaattggtgaaaatgattattcagcgccagtatgatcccgtgattttgttc
agtttcagcaaaaaggaatgcgaggcacttgctatgcagatgtctaagatggatttaaac
agcgacgatgagaaagactccgtggagacaatctttactagtgccatcgatatgctttca
gatgatgataagaagctacctcaggtgtcaaatattttacccatcttaaaacgtggtatc
ggcgttcatcattcgggcttgcttccaattttgaaagaagtaattgagatattatttcaa
ggtctgattaagtgtttgtttgcaacagagacatttagtattggattgaacatgccagca
aagacggttgtgtttacaaatgtacgcaagtttgatggagacaagttccggtggctatct
agtggagagtacattcaaatgagtggtcgcgctggacgtcgaggtgttgacaaacgaggt
atctgcatcctcatggtggatgagaaaatggaacccgctgttgctaaatcaatgctcaaa
ggaagtgctgattctttgaacagtgccttccatttgagctataacatgcttctaaatcag
ttgcggagtgaagatggtgatcctgagaatcttcttagcaattctttctttcagtttcaa
gctgaccgtgctatcccggatatcgagaagcaaataaaagccctgcaagaagagagagac
tctatggttattgaagaagaagaaagcttaaggaattactataacctgattttgcagtat
aagagcctgaaggaggatatacgtgaaattgtgttctctccgaagtactgtttacccttt
ttgctgccgaacagagctgtttgtctcgattgcccaagtgataatggagagcaacaatca
ttcagcattgaagaccaggatgcgtggggagtgataatgaaattcaacaaagtcaaaagc
ttatctgaagaaattcttaccgtagatgtactgaccagatgtttggtcagcagagatggc
gctggcaaaaagaaaattaaacctgtgccatttaaggaacgtggtgagcccgttgtcgtc
tctgtacctttatctcaggttaagagtttaagcagtgcaattatgaatatacctaaagac
tatttacaattggaagctcgagagaatgctctgaagaaggtttctgaattactctcgaga
catcctgatggaatacccctggatcctgaagttgatatgaagattcggatcagctcttac
aaaaagacagttcgtcggctggaggctcttgaaaacctatttgaaaaacacaaaattgca
aaatctcctctgatagcgcagaagctgaaagttctacacatgaaggaagagctaacagcc
aagatcaaatcacttgagaaaactgtccgatcttcaacagcattggcgtttaaagatgaa
cttaaggccagaaagcgtgttttgcgaaggctaggatacatcacaagcgacaatgttgtg
gagttgaagggaaaggttgcatgtgaaatcagtagtgcagaagaattgacattaacggag
ctaatgttcagtggtgtcttcaaggaagcaaaggtggaggagctggtttctctcctctct
tgctttgtgtggcgagagaggctccctgacgcagctaaacccagagaagaactcgactta
ctcttcatacagttacaagatacagacaggcgtgctgctgaagttcagctaaccctcttt
tcccctactcatccgagaagatttgggtccataactgtcctttctgacaatgtggcaggt
cgatatcgacgtagagagttttgtgcattcgttcagaccggatataatggtggcggtgta
tgcgtgggcaaaaggctccaagttttacgagatcatggagattgctcgtgttttcgaagg
gagcttgatcagagcgataaggagaatggaggaagttctacaacagctcatcgtagctgc
aaaatccataggtga
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