Brassica napus (rape): 106374473
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Entry
106374473 CDS
T04128
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
bna
Brassica napus (rape)
Pathway
bna04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106374473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106374473
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
106374473
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106374473
Multi subunit type E3
ERAD complex
106374473
LMBR1L-GP78-UBAC2 complex
106374473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
CUE
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-C3HC4_3
zf-RING_11
Endonuclease_7
zf-C3HC4_4
zf-RING_16
zf-RING_5
E3_UbLigase_EDD
zf-HC5HC2H
RINGv
PHD
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
106374473
NCBI-ProteinID:
XP_048600132
LinkDB
All DBs
Position
C1:13427181..13431556
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AA seq
581 aa
AA seq
DB search
MGINYLSVSVASTALSFVGLQVLTELSLDKLISNGMIAKKSISLTDSDHALDLLLASYFT
IALLAIFVLNVYILLLLSLKTLFFGDLFSVEAKTLVLRLANYIIYKMFQALARDRLERLN
ASPSSTPRTYFRAYSVLFLVLSVDFLWIKLALMTYSTIGSSVYLLLLFEPCSIAFETLQA
LLIHGFQLLDMWINHLAVKNSDCRKSKFLDSMTAGSLLEWKDLLNRHLGFVLDMATLVMA
LAHFLYIWWLHGLAFPVVDAVLLLYVRALLRVILKRIKGYIKLRTALGSLHAALPDATSE
EFRAYDDECAICREPMGKAKKLHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLFAGRTE
NEANPRTTEVSSDELLARQLERQNSPGHPLATGLFPADIPNPIESDPSRFSSFFFNDLLN
QSNSLLYYLMITLFFLQNRDLGLDPSWLQAWSGQGVDMAGPSRASRSVGLGRVHMMMRHL
ASVGESYAQNALDDAAWSLWPMSPSQASTSSATVPPGGGGRTGGGLHLRSVSSGTNESLA
NILAMAETVREVMPHVPDEIIFQDLQRTNSVAVTVNNLLQM
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggggataaactacttgtccgtctccgtggcatcaacagctctgagctttgttgggctt
caagtcttgacggagttgtctcttgataaacttatatcaaatgggatgattgccaagaag
agcatttctttaacagactctgaccatgcccttgacctgcttctcgcttcttactttacc
atcgccctcctcgcaatttttgtgctcaatgtctatattctgctgctactttctctcaag
actctattttttggagatttatttagcgttgaagctaaaacgttggtgctgcgacttgcc
aattacatcatttacaagatgtttcaagctttggctagagaccggcttgaacgattgaat
gcatctccttcttctactcctcggacctactttcgtgcgtattctgtgctcttcttggtt
ctctctgttgatttcttgtggataaagcttgcccttatgacatatagtacaattggttct
tctgtgtatctgttgttactttttgagccatgcagtatagcttttgagaccttgcaggcg
ctgttaattcatgggtttcagctacttgatatgtggatcaaccacttggcagtgaagaac
tcggactgccgaaaatctaagtttctcgattccatgacagcaggctcactgttggaatgg
aaggacctactcaaccgacaccttggtttcgtcctggacatggctactttggtaatggcg
ctagctcattttctgtacatctggtggctgcatggtttggcctttcctgtggtggatgca
gttttgttactctacgtacgtgcattgctcagagtaattctgaaacgaataaaaggatac
attaaactgagaacagctctaggatcactccatgcagccctgcctgatgcaacttctgaa
gagtttcgggcatatgatgatgaatgtgctatatgccgggaacctatgggtaaggctaaa
aagcttcactgcaaccaccttttccatcttggttgtctgagatcctggttggatcaaggt
ctgaatgaggtctattcttgtcctacatgtcgtaagcctctttttgctggtagaactgaa
aatgaggcgaaccctcgcacaacagaagtctcaagtgatgagctgttagctcgtcagctt
gaaaggcagaacagtcctggacatccactagctactggattgtttcctgccgatatacca
aatcccattgaaagtgatccttcaaggttcagttcattcttctttaatgatttactaaat
caaagtaacagtttgctttattacttaatgatcacccttttctttttacaaaatagggac
ttgggattggatccaagctggctgcaggcgtggtcaggtcagggcgttgatatggctggt
ccctctagagcttctaggtccgttggactggggagggttcatatgatgatgaggcatctt
gcatctgttggggaaagttatgctcagaatgcacttgacgatgctgcatggagtctttgg
ccgatgagcccttctcaagcatccacttcttctgcaaccgtacctccaggtggtggtgga
aggacaggaggtggcctgcatctaagaagtgtatcaagtgggacaaatgaaagcttggca
aatatactagccatggccgagacagtgagggaagtcatgccacatgtgcctgatgaaatt
attttccaggacttgcagagaacaaactctgttgctgttactgtgaacaatcttctccag
atgtga
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