Brassica napus (rape): 106375233
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Entry
106375233 CDS
T04128
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
bna
Brassica napus (rape)
Pathway
bna04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
106375233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bna04121
]
106375233
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
106375233
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
106375233
NCBI-ProteinID:
XP_048597349
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Position
A9:complement(38027533..38031264)
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AA seq
595 aa
AA seq
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MYKRVALSFPEEVLEHVFSFIHVDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSPAA
VIRRFPKARSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSASYTWLEEIRLKRMVVSDE
CLELIAKSFKNFKVLVLSSCDGFSTDGLAAIASSCRNLKELDLRESDVDDVSGHWLSHFP
DTYTSLVSLNISCLVSEVSFSALERLVCRSPNLKSLKLNRAVPLEKLAALLQRAPQLEEF
GTGVYSAEVRPDVLSGLSVAISGCKKLKWLSGFWDALPAYLPAVYSVCSGLTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDDGLEMLALTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSAGCPKLESVLYFCRQMTNAALVTIARNRPNMTRFRLCIIEPKAPDHLTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC
ESLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSAMRFSRQIITTNGL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtataagcgagtggccttatcgttccccgaggaagtcctcgagcacgtgttctccttc
atccacgtggacaaggacaggaactcggtatccctggtgtgcaagtcgtggtacgagatc
gagcggtggtgcaggaggagagtcttcatcgggaactgctacgccgtgagccccgcggcg
gtgattcggaggttccctaaggcgagatccgtggagctgaaggggaagccgcacttcgcg
gacttcaatctggtgcccgaggggtggggagggtacgtgtacccgtggatagaggcgatg
tcggcgtcgtacacgtggctggaggagataaggctgaagaggatggtggtgagcgacgag
tgcttggagcttatagccaagtcgtttaagaattttaaagtgctcgtgctttcctcgtgc
gatggattctccacggatgggctcgctgctatcgcttcgagctgcaggaatctgaaagag
cttgatttgcgtgagagtgatgttgacgacgttagcggacactggcttagccatttccct
gatacgtacacttctttggtttcgctcaatatctcatgcttagtctccgaggtcagtttc
tctgctctggagcggctggtgtgtaggtctcccaacctcaaatcactgaagcttaaccga
gctgttcctcttgagaagttggctgctttacttcaaagagctcctcagctggaggaattt
ggcactggtgtgtacagtgctgaagtgcgtccggatgtgctctctggtttgtctgtagct
atctctgggtgcaagaaattgaagtggttatctgggttttgggatgctcttcctgcgtat
cttcctgcagtttattcggtttgcagtggacttacaactttgaacttgagttatgcaaca
gtccagagctatgatcttgtcaagcttcttagtcaatgtcctaaattgcagcgcctctgg
gtgttggactacatcgaggatgatggtcttgaaatgcttgctttgacctgcaaggacctt
cgagagctgagggtgtttccgtctgagccttttgtgatggagccgaacgttgcgttgaca
gaacaagggcttgtctccgtctccgcaggctgtccgaaactcgagtcggttctctacttc
tgccgtcaaatgaccaatgctgcgctggtaaccattgctaggaaccgtcccaacatgacc
cgcttccgtttgtgcatcattgagccgaaagcccctgaccatctgactctagagccactg
gatgtgggattcggagccatagtggagcactgcaaagatctccggcggctctccctgtca
gggctgttgaccgacaaggtcttcgaatacattgggacgtatgcaaagaagatggaaatg
ctgtcagtggcgtttgcaggagacagtgacttggggatgcatcatgttctgtcagggtgc
gagagcttgaggaagctagagataagggactgcccctttggagacaaggcgcttttggca
aatgcttcgaagctggagacaatgcgatctctttggatgtcttcgtgttccgtgagtttt
ggagcctgcaagttattaggacagaagatgccaaagctcaatgtggaagtgatcgatgaa
aggggtccgcctgactcgagacccgagagctgccctgttgaaagagtgttcatataccga
acagtggcgggtcctcggtttgacatgcctggtttcgtctggaacatggaccaacaacac
tcagcaatgaggttttccaggcaaatcatcactactaacgggttatag
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