Brassica napus (rape): 106375605
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Entry
106375605 CDS
T04128
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106375605
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106375605
Spliceosome [BR:
bna03041
]
Complex C
Other components
Complex C specific factors
106375605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
AAA_23
nSTAND3
T2SSE
AAA_29
Motif
Other DBs
NCBI-GeneID:
106375605
NCBI-ProteinID:
XP_013671011
LinkDB
All DBs
Position
C1:7508610..7513475
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AA seq
695 aa
AA seq
DB search
MAFWKPGTEKPSFVEDEEGGIVLMSNNLSSSSSSSFGYANIEKQRQRLPVYKYRTEILYL
VENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVSKRVADEMGV
NLGDEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSISTD
ILLGLLKKIQRRRPELRLIISSATIEAKAMFNFFNTSKKRQAPEGSAQGPNLEPAILSVE
GRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQDDIETAIKLLAEEAH
SNQKNSSGLLPLPLYSGLSRTEQELIFTPTPRGKRKVILSTNIAETSLTLEGVVYVIDSG
FSKQKFYNPISDIESLVVAPISKASARQRSGRAGRVRPGKCYRLYTEDYFLKEMPGEGIP
EMQRSNLVSTVIQLKALGIDNILGFDWPSPPSPQAMIRALEVLYSLQILDDDAKLTSPTG
FQVAELPLDPMISKMILASNELGCSDEIITIAAVLSIQSVWVIARGVQKEQDEAKLRFAA
AEGDHVTFLNVYKGFLESKKSSQWCYKNFLNYQSMKKVVEIRDQLKRIARRLGITLKSCD
GDIDAVRKAVTAGFFANACRLEPHSNGVFKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIV
STERQYMRNVVTINPSWLTEAAPHFYQNRQNNMSL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttggaagccaggaacggagaagccaagcttcgtagaggatgaagaaggaggc
atagtgctcatgtccaacaatctctcatcctcttcttcttctagttttgggtatgcgaat
atagagaagcagaggcagagattgccagtgtacaagtacaggactgagattctgtatctg
gtggagaatcacgctaccaccatcatcgttggcgagacgggcagtggcaaaactacccag
atccctcagtaccttaaagaagctggatgggctgaaggaggccgtgttattgcttgcaca
cagccaaggcgtttagctgtccagtcggtttctaagagggtggcagatgagatgggggtg
aatcttggggatgaagttggctacacaattcgatttgaagatcatacaacttcaggtgtg
actagtgtgaaatttctcactgatggagtacttatccgagagatgatggaggatcctctc
ttgacaaagtatagtgttattatggtagatgaagctcatgagagatctatctcaaccgac
attttactaggactcttaaaaaagatacaacgtcgtcgtcctgagctgcgtcttattatc
tcgtcagccacaatcgaagcaaaagcaatgttcaatttcttcaataccagtaaaaaacgc
caagcgccagaaggtagtgcccaaggaccaaacttggaacctgcaatcttatctgtcgag
ggcagaggcttcagtgtaaaaattcactatgttgaggagcctgtttcagattatattaga
tcggttgtttcaacgattttgttgattaacgaacgggagccacctggggatgttcttgta
tttctgacaggtcaagatgatattgaaactgctattaaacttcttgcagaagaagctcat
agcaatcaaaagaattcttcaggactgctccctctgccactatattcaggactttcacga
acagaacaggaactgatctttactccaactcccagaggaaaaagaaaagttatactctca
acaaatattgcagaaacatcattgactctggagggagttgtctatgtgattgatagtggt
ttctcaaagcagaaattctataacccgatttcagatatcgaaagtcttgtggtggcacca
atatccaaagcatctgctagacaaaggtctggtagggctgggcgagttcggcctggaaag
tgttacaggctttacaccgaagattattttctcaaggaaatgcctggagaaggtataccg
gagatgcagaggtcgaatcttgtttcaactgtgatacagctaaaagctttgggaatagat
aatatattgggtttcgattggccttcacctccatccccacaagcaatgatacgggcactt
gaagtactttattcacttcaaatccttgatgatgatgcaaaactcacttctccaacagga
ttccaagttgcagaacttccactggacccaatgatatcgaagatgatcttagcttcaaat
gagcttggttgttcagatgagatcattacaattgctgcagttctctctatccaatctgtt
tgggtcattgccaggggagtacagaaagaacaagatgaagcaaaattgagatttgcagct
gcggagggtgaccatgtcacattcctgaatgtatacaaaggtttcctcgagtcgaaaaaa
tcttcacagtggtgttacaagaatttcctcaactatcaatccatgaaaaaagtggttgaa
atcagggatcaactcaaacggattgctcggagattaggcatcaccctgaaatcatgtgat
ggagacatagatgctgtgagaaaagctgtgactgcagggtttttcgccaatgcatgccgc
ttagaaccacacagcaatggagtattcaagaccattagaggctctgaagaagtttatatc
cacccatcgtccgtattgttcagggtgaatccgaaatgggtggtttaccagtccattgtc
tcaacagagcgtcaatacatgaggaatgtcgttaccatcaatccttcttggctgacagaa
gctgctccgcacttttaccagaaccgccaaaacaatatgtccttgtag
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