Brassica napus (rape): 106375860
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Entry
106375860 CDS
T04128
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
bna04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106375860
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106375860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106375860
04121 Ubiquitin system [BR:
bna04121
]
106375860
03400 DNA repair and recombination proteins [BR:
bna03400
]
106375860
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106375860
Spliceosome [BR:
bna03041
]
Complex B
Other components
Prp19 complex
106375860
Complex C
Prp19-CDC5 complex
106375860
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
U-box type E3
106375860
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
106375860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_SPT8
NBCH_WD40
Beta-prop_RIG_2nd
U-box
eIF2A
WD40_like
Beta-prop_DCAF4
zf-Nse
PROPPIN
PAS_11
B-prop_COPA_B_2nd
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
106375860
NCBI-ProteinID:
XP_013671322
UniProt:
A0A078GF61
LinkDB
All DBs
Position
C4:complement(56566513..56571173)
Genome browser
AA seq
525 aa
AA seq
DB search
MNCAISGEVPEEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDVVPIKTGKVIK
PKPVHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANAALSNGKRAAGDEEMGPDAKKLCPGISAEIITEL
TDCNAALSQKRKKRQIPETLASIDSLERFTQLSSHPLHKTNKPGICSMDILHSKDVIATG
GVDATAVIFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRDSGDRNYA
CGHTLNDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAKVSDESEKVDYTAAA
FHPDGLILGTGTSQSIVKIWDVKSQANVAKFDGHTGEVTSISFSENGYFLATAAEDGVRL
WDLRKLRNFKSFLSADANSVEFDPSGSYLGVAASDIRLYQTASVKAEWNLIKTLPDLSGT
GKATCVKFGPDAQYVAVGSMDRNLRIFGLPGDEKANAEDDSAQDS
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaactgtgcaatttccggagaagttccagaggagccagtggtttcaacgaagtcaggt
ttgctcttcgagaggcgattaatcgagaggcatatatcggattatgggaagtgcccggtt
actggagaacctcttaccattgatgacgttgttcccatcaaaaccgggaaggttataaaa
ccgaagccagtgcatacagctagcatccctggattgcttggaacgttccaaaatgaatgg
gacggtttgatgctatcaaattttgcactggagcaacaactgcatactgcgaggcaagag
ctaagtcatgccttgtatcagcatgattctgcctgtcgcgtgattgctaggcttaaaaaa
gaaagagatgaagcgcggcaattgcttgcagaggttgaaagacatatacctgcagccccg
gaagctgtgacagctaatgctgctcttagcaatggtaaacgggctgccggtgatgaagaa
atgggtcctgacgcgaagaagttgtgtcctggcatttcagctgaaattatcacggagttg
acagattgcaatgctgctctttcccagaagcgcaaaaagcgtcagattcccgaaacattg
gcttcaatagattctttggagaggttcactcagctatcaagccacccacttcacaagacc
aacaaaccgggcatttgttccatggacatcctacattctaaggatgtcattgctaccgga
ggagtggatgcaactgctgttatctttgatcgcccttcagggcagatcttgtcaacactg
actggtcactcgaaaaaggttacaagcgtaaaatttgtaggtgacagtgatcttgtcttg
actgcttcggctgacaagacggtccgtatctggcgggattctggggataggaattatgct
tgtgggcatacattgaatgatcactctgcagaggtgcgagctgtaactgtgcatgccaca
aataaatactttgtgtcggcatctcttgacagtacatggtgcttctacgatctttcctct
ggcttatgccttgcaaaggtatccgatgaatctgaaaaggtggattacacggctgctgct
tttcatcccgatggtctcattctcggaaccggtacttctcaatctattgttaagatttgg
gatgttaaaagtcaggcaaacgtagcgaagtttgatggacacaccggtgaagttacctct
atatctttctctgagaatggttatttcctcgcgactgctgccgaggatggtgttaggttg
tgggacctgcgcaagttaaggaacttcaagtcattcttatctgcagatgcaaactctgtg
gagtttgaccctagcggatcttatcttggtgttgctgcatcagatatcagactataccag
acggcgagtgtgaaagctgaatggaaccttatcaagacactcccagacctctccggcact
ggtaaagctacatgtgtgaagtttggtccagatgcacaatacgttgccgttggttccatg
gaccgtaacctacggatatttggtcttcctggtgacgaaaaagccaacgctgaggatgac
tctgcacaagactcgtga
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