Brassica napus (rape): 106375976
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Entry
106375976 CDS
T04128
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106375976
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106375976
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106375976
NCBI-ProteinID:
XP_013671462
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Position
A1:complement(6688886..6692768)
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AA seq
393 aa
AA seq
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MTPFFILCLSVILFLCQSLVGAVNKGYYGYNSVASYLPEKPQNIMNPVDSCWRLKSDWTA
NRKDLADCAVGFGSSALGGKKGSIYVVTNPNDNAANPQPGSLRYGVIQDKPLWITFAKDM
VLTLENELMVNSYKTIDGRGAKVEIAYGPCITIQEVTNVIVHGISIHHCKPGKYGMVRSS
TTHVGHRKGSDGDAIAISGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKV
MLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSAD
PTIFSEGNYFIASDNSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSVALPY
SSAQRFPVAPGNLVPSLTVGAGPLNCYPNRPCY
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctttcttcattttgtgtctctccgtgatactattcttatgtcagtccttggtt
ggagccgttaacaaaggctattacgggtataactcggtggccagctacctacccgagaaa
cctcagaacatcatgaatccggtggactcgtgttggcggctcaagtctgactggacggcc
aaccgcaaagatttagccgattgtgcggttgggtttggttcatctgccttgggcggcaag
aaaggcagtatatatgttgtcaccaaccctaatgataatgcagcgaaccctcaacccggt
tctctgcgatacggtgtgatccaagacaagccgctgtggatcactttcgctaaggatatg
gtcttaaccttagagaatgagctcatggtcaatagctacaagaccatcgatgggagaggg
gcaaaagtggaaattgcgtacggaccttgcattacgatacaagaagtgacgaacgtaatt
gtgcacgggatcagtatccaccactgcaaaccgggtaagtacggaatggtgaggagtagc
acaacgcacgtaggtcatcgaaagggatcggacggtgatgctatcgcgatttccggttcg
tctaatatttggatcgaccattgttacctagcgagttgtacggacggtcttatcgatgtg
attcatgcttccacgggaataactatttccaacaactattttactcagcatgataaagtg
atgttgcttggacacaacgatgatttcgtgcaagatgtgaaaatgaaagtgaccgttgca
ttcaatcattttggaccaggacttgtggagagaatgccaagggtacgacgagggtacgct
catgtggcaaacaatagatacgataaatggataatgtatgcaattggtggtagcgccgat
ccaaccattttcagtgaaggcaactatttcattgcttctgataattctaacagcaaagag
gtgacaaagagagaagtgaaaggagggtggaacaattggagatggagaacttcaaaagac
gttttcaagaacggcgcttacttcgttccttctggttacggcagcgttgcgcttccatat
agttctgctcagcgatttccagtcgctccagggaacttggttccttctctaaccgtaggc
gctggccctcttaactgctatcccaaccgcccatgttattag
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