Brassica napus (rape): 106377089
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Entry
106377089 CDS
T04128
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bna01009
]
106377089
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bna04131
]
106377089
Protein phosphatases and associated proteins [BR:
bna01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106377089
Membrane trafficking [BR:
bna04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
106377089
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
EXOC6_Sec15_N
DUF7791
Motif
Other DBs
NCBI-GeneID:
106377089
NCBI-ProteinID:
XP_013672705
UniProt:
A0A816R9H0
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Position
C1:8259819..8267343
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AA seq
1035 aa
AA seq
DB search
MDSHPSLIGRSIGNSNRSSVDLGRSTPSSPSPSSLSKSISDASSQSLSSILNNPHGGKSG
VYGSDASWVGWWSSSTSVAPSEFAPVASTKLPGSDLTRSDFHGYVSSISDSHARFEDIRN
HAKEESSGFDQESHVSGLASCLREVPSLYFKEDFALEDGATFRSACPFSTLTENLALQEK
LSQYLDVVELHLVKEISVRSDSFFEAQGQLQDLNVKIVEGCSRIRELKETIRLLDRNLVD
SARQIQELSSTRINMLELQRKLRVILYVNQALSALKLLVASADCAGALDITDDLQNLLAG
DELTGLHCFRHLRDHVTTSIESINSILTAEFMRISIHNTGEIDVLILSAAKKRGSISSNW
ETGEVKLEEEDTSTLCDRLLPLVIGLLRTAKFPSILRMYREALTSEMKNAIKNAVAELLP
ILVARSLESDFSHGERSVDVDGGGLSLASKLRALSSEAFVNLLTAIYRIVQAHLVRASEV
KKAIEWILCNIDGHYAADSVAAAIAVGAVAAESIQETGFLGEPLVSSPLGKAISKATPLQ
RKSSDTSSLINMSRNFRADVLRENTEAVFAACEVTHARWAKLLGVRALLHPKLKLQEFMS
IYDLTQEFITATEKIGGRLGSSIRGTLQSQAKAFVDSQHEARMTKLKAVLDQETWDEMDV
PEEFQSIISSLFASQELISRKVDDADTITYHRNPLTPNGSLTSGTEDQNTELRNENSESS
EGPAVSNAQVKSTVSPESLERSKAVVSSVANNQSNQKAHGKSNLFYQGVGYHMVNCGLIL
LKMLSEYIDMNNSLPALSSEVVLRVVEVLRFFNTRTCQLVLGAGAMQVSGLKSIKAKHLA
LASQVIDFTYTIIPESRRIMFSKVPETRKPLLSVEIDRVAQDYRVHRDEIYAKLVQIMRE
RLLAHLHGLPKVVESWNRPPDSNKQTKEFAWPLTREVGYLHRVLSETLHEADVQAIFRQV
ISAIHTQTSQTLSNLEISSPEAKKRLKLHVELILKCIRSLPSDNANESGIPNWGQLDEFF
AQHFKEEEEEGGEAE
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcatccttccttaatcggaaggtccatcggcaacagcaaccgatccagcgta
gatctcggtcgttcaacaccttcctctccttccccttcatcgctatccaaatcgatctcc
gatgcaagtagccagagcctctcttcgatcctcaacaacccacacggaggcaaatccggc
gtctacggctccgacgcctcctgggttggctggtggtcatcctcaacctccgtagctccc
tccgagttcgcgcccgttgcttcgaccaagctccccgggtcggacctcaccagatccgac
ttccacggctacgtctcctcgatctccgactctcacgctaggttcgaggatatcaggaac
cacgccaaggaagagagctccgggtttgatcaggagagccacgtgtccggtttagcttcg
tgccttcgcgaggttccttcgctctacttcaaggaggatttcgcgttggaggacggagct
acatttcgctccgcgtgccctttctcgaccctgacggagaatctagcgcttcaggagaag
ctgtcgcagtatcttgatgtggtggagctgcatcttgtgaaggagatctcggtgaggtct
gattcgttctttgaggcgcaggggcagttgcaggatttgaatgtgaagattgttgagggg
tgtagtaggatccgcgagttgaaagagactattaggcttcttgataggaatttggtggat
tctgctcggcagattcaggagctgagctcgactaggattaatatgttggagctgcagcgt
aaattgagggtcattttgtatgttaaccaagctctctctgcactcaaattgcttgttgcg
tccgcagattgtgctggagcgttggatataactgacgatctccagaacttgttggccggg
gatgagctaactggtctacattgcttccgtcaccttcgagatcatgtcactacttccata
gagtctataaacagtattctcacagctgaatttatgcgtatctcaatacacaatactggg
gaaatagatgtactgattttatctgctgcaaaaaaacgtggatccatatcttctaactgg
gagacgggtgaagttaagctagaagaagaagatacgtctaccttatgtgatcggcttctt
cctctagtaattggattgctacgaacggcaaagttcccatcaattttgaggatgtatcgt
gaggcactgacatctgaaatgaaaaacgcaatcaagaacgcagttgctgagctgcttcca
attcttgttgcaagatcgctcgaatctgatttttcacatggggagcgctcagtagatgtt
gatggtggtggattatctctcgcgagcaagttgagggctctgtcatctgaggcatttgtt
aatctcttaactgctatatatcggattgttcaggcacatcttgttcgggcttcagaagtg
aaaaaggcaattgaatggatcctctgcaatatcgatggacattatgcagctgattccgtt
gctgctgcaattgctgttggtgctgtagcggccgaatcaatccaggaaacaggtttccta
ggcgagccattagtgtcttctccattgggtaaggctatctcaaaggctactccgttgcag
agaaaatcaagcgacacatcaagcttgataaacatgtcaagaaacttcagggccgatgtc
ttgagagaaaacacagaagctgtctttgcggcctgtgaggttactcatgctagatgggca
aagctactaggagtccgtgctcttcttcatccaaaattgaaattgcaggagttcatgagc
atttatgatctcacccaagaatttataacagctacggaaaagattggcggacggttggga
tctagtattcgagggacgctgcaatcacaagccaaagcctttgtagattcccagcatgaa
gctcggatgacaaaactgaaagctgtccttgatcaagaaacatgggatgagatggatgtt
cccgaagaattccaatcgataatcagttctcttttcgcatcccaggagttgatttcaagg
aaagttgatgatgctgatactataacataccacagaaacccgctcactcccaatgggtct
ctcacttcaggaactgaagatcaaaatactgaactacgaaatgaaaattctgaatctagt
gaaggtcctgctgttagtaatgcacaagtgaaatctacagtttcacctgagtctcttgaa
cgaagcaaggctgttgtatcttcagttgcgaataatcaaagtaatcagaaggcgcatgga
aaatctaaccttttctatcaaggagttggttaccacatggtaaactgtgggttaatatta
ctcaagatgttgtcagaatacattgatatgaataattctttgccagctctgtcctcggaa
gttgttcttcgtgttgttgaagttttgagatttttcaacactaggacatgccaacttgtc
ctgggtgctggtgctatgcaggtttctggtttaaagtccataaaggcaaagcacttggca
cttgcaagtcaagtaatcgacttcacttacactattattcctgaatccagaagaattatg
ttttcaaaagtacctgagacgagaaagccactcttgtcagtagagattgatagagtcgct
caggattatagggttcatcgagatgaaatatacgcaaagctggtccagataatgagagaa
agactgttggcgcatcttcatgggttgccaaaagttgttgagagctggaacagaccacca
gacagcaataaacaaactaaagagtttgcctggccactcacaagggaagttggctacctt
catcgggtcttatccgagacattgcatgaagcagatgttcaagcaatcttcaggcaggtg
atttcagccatccacacccaaacttctcaaacgctttccaacttagagataagctctcca
gaggcaaagaaaaggctaaagcttcacgttgagcttatcctcaaatgcatccgatcgttg
ccatccgacaatgccaatgaatcaggcatcccaaactggggacaactagatgaattcttt
gcacaacactttaaagaagaagaagaagagggaggcgaagctgagtga
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