Brassica napus (rape): 106378491
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Entry
106378491 CDS
T04128
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106378491
03015 mRNA surveillance pathway
106378491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106378491
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106378491
5.6.2.5 RNA 5'-3' helicase
106378491
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106378491
mRNA cycle factors
Common to processing body (P body) and stress granule
106378491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
UvrD-helicase
SLFN-g3_helicase
nSTAND3
Helicase_RecD
NPHP3_N
PhoH
ATPase
AAA_16
Viral_helicase1
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
106378491
NCBI-ProteinID:
XP_048602324
LinkDB
All DBs
Position
C2:45655066..45662569
Genome browser
AA seq
1216 aa
AA seq
DB search
MDSQPSDLFDTASQPDTAVDAYTFLEFNSQGDSEFDFPEFRSPNAWPTPSDSISVVEPSD
RGGGGVPAADHHSEASSPSSLSAKAGRGGSSSQADALAAGIGNLNFEETGDDDGFDYGKN
DFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHRDS
PLGETILECYNCGCRNVFLLGFISATTDSVVVLLCRDPCLNVNALKDMNWDLSQWCPLID
DRCFLPWLVKVPYEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDDEPQPVQP
KYEDAYQYQNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVFPKEENEL
RLVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRANQGVPIDVNHGFCVDFVW
KSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQLVRNPLPRRFGVPGLPELNASQ
INAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS
ATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEK
KYKNLKRATEREITQSADVICSTCVGAADLRLSNFRFRQVLIDESTQSTEPECLIPLVLG
VKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGIKPIRLQVQYRMHPALSEFPS
NSFYEGTLQNGVTVNERLTTGIDFPWPVPNRPMFFYVQLGQEEISASGTSYLNRTEAANV
EKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYKEIEVASVDSFQGRE
KDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYK
EHECLVEGPLNNLKQSMIQFQKPRKMYNDRRPFYGGGAGMIGNDNPNADRRGSRGRAGGS
YMPSGPPSGSRLHPAGYPIPRVPFSPFPGGPPSQPYAIPTRGPVGTGRGSSVGGHLPHQQ
ATQHNVGTIGPNVNFPLDSPNSQPSPGGPLSQPGYGSQAFRDGFMGGISQDFLGDDFKSQ
GSHVPYNMGDYSTQGGYAVDYATQGAHGAFPGNFMNQNSQGGYSRFSGSNDFMSQEYMPH
GAQGLFTQAGFIDSSQDDGQQNPFGVNNPNLQSQGLPNSLYSQPFSHYTQPLNLSGPQQS
QPPNQGSQNPKPPHNG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcaaccgagcgatctctttgatacggcatctcagcccgatacggcggtggac
gcgtacaccttccttgaattcaattcccaaggcgactcggagttcgatttcccagagttc
cgatcaccgaacgcatggcctacaccgtctgattccatctccgtcgtggagccttccgat
cgcggcggcggaggagtacctgccgcggatcaccattccgaggcctcctcgccttcttcc
ctgtctgccaaggccggacgtggtggtagcagcagtcaggcggatgcgttggctgcgggg
attggaaatttgaacttcgaggagactggtgatgatgacggtttcgattacggaaagaat
gatttcacggagcacgcttgtaagtattgtggtatctcgaacccggcttgcgttgttagg
tgtaatgtggcctcctgtagaaagtggttctgcaattcaaggggaaacacctccggctcc
cacatcgtcaatcatctggttcgagccaaacacaaggaggtttgtctccatagagacagt
ccgttgggtgaaacaattctcgaatgctacaactgtggatgtcggaatgtctttcttctc
ggtttcatctcagcaactacagacagtgttgtcgtccttctctgtagagatccttgtttg
aatgtgaatgctctcaaggatatgaactgggacctaagccagtggtgtcccttgattgac
gataggtgtttcctcccctggcttgttaaggttccgtatgagcaagagcagctgagggca
cgacaaattagtgcacagcaaataaacaaaatagaggaattatggaagacaaatccggat
gctacccttgaagaccttgaaaaacctggcgtagacgatgaacctcagcctgttcaacct
aagtatgaagatgcttatcagtatcaaaacgtgtttgctcctcttattaaactcgaagca
gattatgacaagatgatgaaagaatctcagagcaaggaaaacctcacagttcggtgggat
attggtctgaacaagaagcgtgttgcctacttcgtcttcccaaaggaggaaaatgaattg
cgattggtgccgggtgatgaactacgtctacgctactcaggagatgctgctcatccagct
tggcaatcagttggacatgtggtcaagctaactgcccaagaggaggttgctcttgaacta
cgagctaatcagggagttccaatcgacgtgaaccatggattctgtgttgattttgtgtgg
aaaagtacaagttttgatcggatgcagggagcaatgaaaaattttgctgtagatgaaacg
agtgtgagtggttatatttaccatcagctattgggacatgaagttgaggcgcagttggtc
cggaacccacttcctcgacgttttggggtaccaggtcttccagaactgaatgcatctcag
attaatgcggtgaagagtgtccttcagaagcccatcagtttgatccaaggtccacctggc
acaggcaaaactgtgacttctgctgcaattgtgtatcacatggcaaaacagggccaggga
caggttctcgtttgtgccccaagtaatgttgcggtcgaccagctagcagaaaaaattagt
gctactggtttaaaggttgttcgactttgtgcaaagtcaagggaagctgtaagttcgcct
gttgagcatttgacccttcactaccaggtacgacatcttgacacttctgagaagagcgag
ctgcataagctacagcaattgaaagatgaacaaggtgagctgtcaagcagtgatgaaaag
aaatacaaaaatttgaaaagagcaacagaacgcgagataactcagagtgctgatgtcatt
tgctctacttgtgttggtgctgcggatcttcggctgtcaaattttagatttagacaggtc
cttattgatgagtctactcagtctacagaacctgagtgtcttattcctttggtcctcggg
gtaaaacaggttgttcttgttggtgatcattgtcagcttggccccgtaattatgtgcaag
aaagcagctcgtgctggcttggcacagtctctctttgaacgccttgtgcttcttggcatt
aaaccaattagattgcaggttcaatatcgtatgcatccagcgttgtccgagtttccatcc
aatagcttctatgaaggaacactacagaatggagtcacggttaatgaaaggctaacaaca
gggattgatttcccctggcccgtacctaataggcccatgtttttctatgttcagctgggg
caagaggagatcagtgctagtggaacatcatacctaaatagaaccgaggctgctaatgtg
gagaaacttgtgaccgctttcttaaagagtggagttgtccccagtcagattggagtgata
actccgtacgagggacagagggcatatattgttaattacatggcaagaaatggttctctc
cgacagcaactttacaaggaaattgaggttgccagtgttgattcttttcaaggaagagaa
aaagattacatcatattgtcctgtgtcagaagtaacgagcatcagggcattggattcctt
aatgatccacggaggctcaatgttgcactcacacgtgctcgttatggaattgttattctt
ggaaacccgaaggttcttagtaaacagcctctgtggaatggcttgctgacacattacaag
gaacatgagtgtttagttgagggacctcttaataatttaaagcagagcatgatacaattc
caaaaaccaagaaagatgtataatgatcgcagaccattttatggtggtggggctggcatg
attggaaatgataatcctaatgctgacagaagaggcagccgtggaagggctggtggttct
tatatgccttctggcccacctagtggttcgagattacacccagctggctacccaataccc
agggtgccattttcaccgtttcctggtggtcctccttctcagccatatgctattccaact
cgtggacctgttggtactggtcgtggaagttcagttgggggccaccttccccaccaacaa
gccacccagcataatgttggaactattggccctaatgtgaacttcccccttgatagtcca
aatagccagccttcacctggtggtccgctatcccaacctggatatggaagccaagcattc
agggatggttttatgggcggcatttctcaggatttcttaggtgatgatttcaagagccag
ggatctcatgttccttacaacatgggcgactattctacacagggaggatatgcggttgat
tatgccacacaaggagcccatggagcttttcctggaaactttatgaaccagaattctcaa
gggggttattctcgtttcagtgggagtaatgatttcatgtcccaggagtatatgccgcat
ggagcacaaggtcttttcacccaagctggctttatcgactcatctcaggatgatggacaa
cagaatccttttggtgtgaacaatcctaatcttcagtctcagggtctcccgaattcactc
tactcgcagcctttctcacactacacccagccactaaacctttcaggcccacagcaatct
caacctcctaaccaaggctcacaaaacccaaaacctcctcacaacggctaa
DBGET
integrated database retrieval system
