Brassica napus (rape): 106379411
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Entry
106379411 CDS
T04128
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106379411
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106379411
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106379411
NCBI-ProteinID:
XP_013674849
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Position
A7:complement(22065073..22067031)
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AA seq
407 aa
AA seq
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MILLHQLSLSLFSCLFLVLAPTFTASNHVSDPELVVQEVNEKINASRRNLGVLSCGTGNP
IDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGRIYVVTDSSDKDAVNPKPGTLRHAV
IQDEPLWIIFARDMVIKLKEELMMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNI
HDCKKRGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCDDGLVDAIRGSTA
ITISNNYLTHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND
YTHWQMYAIGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPQSKWKNWNWRSEGDLFLN
GAFFTPSGGRASSSYAKASSLSARPSSLVASVTSNAGSLSCRKGSRC
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatacttcttcaccaattatctctgtccctcttctcatgtctcttccttgttctagct
ccgaccttcactgcctccaaccatgtctccgaccctgaactcgtagttcaagaagtaaac
gagaagataaatgcgtctagaaggaatcttggtgtcctctcgtgtgggaccggaaaccct
atcgacgactgttggagatgcgacccgaaatgggagaagaaccgacaacgattagctgat
tgcgccattggttttggcaaacacgccatcggcggccgtgacggcagaatctacgtggtg
actgactccagcgacaaagacgcggttaaccctaaaccgggaactctaagacacgcagtg
atccaagacgagccgctgtggatcatcttcgcacgtgacatggtcataaagctaaaagaa
gagctgatgatgaactcgttcaagaccatagacggccgtggagcgagcgtgcacatcgcc
ggcggcgcgtgcatcactgttcagtacgtgactaacatcatcatccacggtgtcaacatc
catgactgcaagaagagagggaatgcttacgtcagagactcgccgtcgcattacggttgg
aggacggcgtctgacggagacgccgtctcgatcttcggtgggtcccacgtgtgggtggac
cactgctccttgtctaactgcgatgacggtctggtcgatgcgatccgtggatcgacggcc
attacgatctctaataactacttgacgcaccataacaaagtgatgcttttgggacacagt
gattcgtacacgagagacaagaacatgcaagtcaccattgcctttaatcattttggtgaa
gggcttgttcagagaatgcccagatgtaggcatgggtattttcatgtggtaaataatgat
tatacgcattggcaaatgtacgcaattggtgggagtgcagctccaacgattaacagtcaa
ggcaataggtttcttgctcccaatgaccacgtcttcaaagaggtgactaaatacgaagat
gcaccacaaagcaaatggaagaactggaattggagatcagaaggtgacttgttcctaaat
ggtgcgttttttacgccctctggtggaagagcctcttcaagctatgcaaaagcttcaagt
ctgtcggctagaccgtcctcgttggtggcttcagtgacgagcaatgctggttctctctct
tgtagaaaaggatctcgatgttaa
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