Brassica napus (rape): 106379447
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Entry
106379447 CDS
T04128
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106379447
09123 Folding, sorting and degradation
03018 RNA degradation
106379447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106379447
03041 Spliceosome [BR:
bna03041
]
106379447
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106379447
mRNA degradation factors
5'-3' decay
Lsm complex
106379447
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106379447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TSNR_N
M11L
Motif
Other DBs
NCBI-GeneID:
106379447
NCBI-ProteinID:
XP_013674852
UniProt:
A0A078FPL4
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Position
A2:complement(7917063..7919213)
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AA seq
98 aa
AA seq
DB search
MATTTGLESLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaactactggacttgagtctcttgtcgatcagatcatttcggttattacaaac
gatggacgcaacattgtgggagttctcaaaggttttgaccaggcgactaatataattctg
gatgaatctcatgaacgcgtcttttccacaaaggaaggagtacaacaacttgtgttgggt
ttgtacattatcagaggcgacaacataggtgttattggggagctagacgaagagctcgat
gctagtctggacttttcgaaactaagagctcatcctttgaaacccgtcgtgcattga
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