Brassica napus (rape): 106379906
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Entry
106379906 CDS
T04128
Name
(RefSeq) probable pectate lyase 3
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106379906
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106379906
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106379906
NCBI-ProteinID:
XP_013675207
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Position
A8:20922490..20924760
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AA seq
458 aa
AA seq
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MTAAVLNIGGYLFVFCLSLLATLTPHVGANVAVFDNYWLQRQGDALKQTIASFDPNPLNV
TDHLNYHVALAVDATESTNSTRRELSQVRNGRKLKRSGKCVAYNPIDRCWRCNGDWEKNR
KKLADCVLGFGRRTTGGKDGPIYVVNDASDDDLINPKPGTLRHAVTRDGPLWIIFGSSMI
INLQQELIITSDKTIDGRGARVYIMEGAGLTLQFVNNVIIHNIYVKHVVPKSGGLIRDSE
QHIGLRTVSDGDGISLFGATNVWIDHVSMTRCSDGMIDAILGSTAITISNSHFTDHEEVM
LFGANDKHVIDKKMQITVAFNHFGKRLDQRMPRCRFGTIHVVNNDYTHWEMYAIGGNMNP
TIISQGNRFIAPPNEQAKQITKREYTPYVNWKMWNWQSEGDYFLNGAYFVQSGKQNAWSP
KPINPVPKKFAIRPQPGTMVRKLTMDAGALGCKPGTPC
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcggttttgaatattggcggctacctttttgtcttctgcttgtcgttatta
gcaacattgactccacacgttggagccaatgttgctgtcttcgacaattactggttacaa
cgtcaaggcgatgcgttgaaacaaaccattgcctctttcgatcctaatcctcttaacgtc
accgaccatttgaattaccatgtcgctttagccgtggacgccacggaatcaaccaacagc
acaaggagagagctctcacaggtgagaaatggtcggaaactaaagagaagcggaaaatgc
gtagcgtacaaccctatagacagatgctggcgatgcaacggtgactgggagaagaaccgt
aagaaactagcggattgtgtactcgggttcggcaggagaaccaccggaggcaaagacgga
cctatctacgtcgtcaacgacgcctccgatgacgatcttatcaaccctaagccaggaacg
ttaaggcacgcggtgacaagagacggaccgctttggatcatattcggaagcagcatgatc
ataaacttgcaacaagaactgatcataacgagcgataaaacaatagatggacgtggagct
agggtttacatcatggaaggagctggattaacgctgcagtttgtgaacaatgtgatcata
cacaatatttatgtcaagcacgttgttcctaagagcggtggtttgatcagagactctgag
cagcatatagggcttaggacggtaagcgatggtgatggaatcagtttgtttggtgcaacg
aatgtttggatcgatcatgtctcgatgactagatgttcagatggtatgattgatgcgatt
cttggctccactgctataactatttccaacagccatttcaccgaccatgaagaggtgatg
ctatttggggccaatgacaagcacgtgatcgacaagaaaatgcagataacggttgcgttc
aaccactttggtaagagactggatcaaaggatgcctcgttgcagattcggaacgatccat
gtggtgaacaatgactacacacattgggagatgtacgcaattggtggaaacatgaaccct
acaatcattagccaaggcaaccgtttcattgctcctcctaacgaacaagccaaacagatt
acaaagagagagtacacaccttacgttaactggaaaatgtggaactggcaatcagaagga
gattacttcttgaatggagcttactttgtgcaatccggaaaacaaaatgcatggagccct
aaaccgattaaccctgtcccgaaaaagtttgccatacgacctcaaccgggaactatggtc
cgtaaactcaccatggacgcaggagcacttggctgcaagccgggtacaccctgctga
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