Brassica napus (rape): 106381668
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Entry
106381668 CDS
T04128
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
bna
Brassica napus (rape)
Pathway
bna03030
DNA replication
bna03420
Nucleotide excision repair
bna03430
Mismatch repair
bna03440
Homologous recombination
bna03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106381668
03420 Nucleotide excision repair
106381668
03430 Mismatch repair
106381668
03440 Homologous recombination
106381668
03460 Fanconi anemia pathway
106381668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
106381668
03032 DNA replication proteins [BR:
bna03032
]
106381668
03400 DNA repair and recombination proteins [BR:
bna03400
]
106381668
Transcription factors [BR:
bna03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106381668
DNA replication proteins [BR:
bna03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106381668
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106381668
MMR (mismatch excision repair)
106381668
DSBR (double strand breaks repair)
HR (homologous recombination)
106381668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
OB_MEIOB_N
BRCA-2_OB1
Fer4_9
DUF936
Fer4_10
Motif
Other DBs
NCBI-GeneID:
106381668
NCBI-ProteinID:
XP_013677047
UniProt:
A0A816X3T5
LinkDB
All DBs
Position
A2:20782302..20785151
Genome browser
AA seq
809 aa
AA seq
DB search
MAANLTAGAIGKMLNGEVTEKEMTPIVQVTELKLIQQARKNQESMERYKLSLSDGFQSQE
GILNNTLNLLVTQGKIQIGSVLRLTHFVTNSVQTRRIVIVMELEIIAEQCNIIGNPLPAH
PGKPRNSDQTQQQPGAVSVNTQSNGRFEQQQQATRSELNGAVRHGSAQQHQVGERRAFGT
ASEFPETTTPSARPFASSNAAYGSSRQVQTRPSPSPPVQSGYQAQPPSMYANMGPVARNE
APPTVVPISALNPYQNRWTIKVRVTSKGELRRFNSTRGGEGKVFSFDLVDAAGGEIRVTC
FNDVVDMFFDMIVVGNVYLITKGSLKPARKEYNHLPNDYEIHLDNASTIQQCYEDDAAIP
RNQFHFKDISAIESMESNSITDVIGIVSSISPTGSIMRKNGTEAQKKALQLKDMSGRSVE
VTMWGNFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKQVSTIGSSQLVVEPDLPEAR
ELRAWYEREGRNAPCISISREFSGAGRQEARKVITQIKDENLGTSEKPDWITVSATISFM
KVENFCYTACPIVNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQLQLQDHTGVT
WATAFQEAGEEIMGMPAKDLYYMKNEDRDEEKFEDIVRKAAFTKYIFKLKVKEETFSDES
RVKATVVKAEKLDYSSDTRSLLEAMNKLRTEDANPLTVNPEGSNYRSGAFNSGIGTSGTR
ETSSADVPHREFGLPAANQVNQFGNQQSSESRPLGGVTLCDACGSNAHVFANCPSFLSEP
QGQHMNSAYGNTPGRNAGGGMPRQHVGSY
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaatttaacggcgggggcgattgggaagatgctgaacggagaagtgacggag
aaagaaatgacgccgattgtgcaagtgacggagttgaagctgattcaacaagcccggaaa
aaccaggagagcatggaaaggtacaagctttcgttatccgatgggttccaatcgcaagaa
gggatacttaataatactttgaaccttctcgtgacgcaagggaagattcaaatcgggtcg
gtcttaagactcactcatttcgtcactaacagcgttcagactcgaaggattgttattgtg
atggaactagagattattgccgagcaatgcaatatcattggaaaccctcttcctgcccac
ccgggcaagcctagaaactctgatcagacacaacaacaacctggagctgtttctgttaac
acccaaagcaatggtcgctttgagcagcagcaacaggctacaaggagtgaactgaatggt
gctgtgagacatggttctgctcaacaacatcaagttggtgagagacgagcgtttggtact
gcttctgagtttcctgaaacaacaacaccttccgctagaccatttgcgagctctaatgct
gcttacggaagctctaggcaggtgcaaactaggccctctccaagcccaccagttcagtct
ggttatcaggcccaaccaccatcgatgtatgctaacatgggaccagtggctaggaacgaa
gctcctcccacggtagttcctatttctgctctgaatccttaccagaatcggtggaccatc
aaggtgagagtcacgagtaaaggagagctcaggcgtttcaacagcacccgtgggggggaa
gggaaggtgttcagttttgatctagttgatgctgctggtggagagattcgggtgacttgt
tttaatgatgtggttgatatgttctttgacatgattgttgtcggtaatgtttacctcatc
acaaaggggagtttgaagcctgctcgtaaagagtataatcatcttcccaatgattatgaa
atacatttagacaatgcttcaacgatacagcaatgctatgaggatgatgctgccattccg
cggaatcagttccattttaaggacataagtgctattgaaagcatggagagcaacagcatc
actgatgttattggcattgtgtcttccatcagcccgacaggctcaatcatgcggaaaaac
ggaaccgaggcgcagaaaaaagcgcttcagttgaaggatatgtcaggcagaagcgtggag
gtaaccatgtggggtaatttctgcaacgcagaaggacagagattacaaagtctttgcgat
tctggtgtgttccctgttctcgctgtgaaggcggggaggatcagtgagtttaacgggaag
caagtgagcaccattggatcaagccaactcgtcgtggagccagacttacctgaagccaga
gagctgagggcgtggtacgagagagaaggacgtaacgctccttgtatctcgatatctaga
gagttctctggtgctggcaggcaagaggctcgcaaggtgatcactcaaatcaaggacgag
aatctagggacctcggagaagccggactggatcacagtcagtgccaccatttcattcatg
aaggttgagaatttctgctacacggcttgtcctatcgtgaatggagaccgtccgtgcagc
aaaaaggtcaccaataacggagacgggacttggcggtgcgagaaatgcgacaagtgcgtg
gatgagtgtgactacaggtatatattgcagctgcagttacaggaccatacgggagtgacg
tgggccacagcgtttcaggaggctggtgaggagataatgggaatgcctgcgaaagatctg
tattatatgaagaatgaagatagggatgaggagaaatttgaagatatcgtccgcaaggct
gctttcaccaagtacattttcaagctgaaggtgaaggaagaaacttttagtgacgaaagc
cgtgtgaaagcaacagttgtgaaagctgaaaagctggactattcttcagacaccaggtcc
ctgctagaggcaatgaataaactcagaacggaagatgcaaatcctctcactgtgaaccct
gagggttccaactacaggtctggtgcgtttaattccggtattggaacctcaggaaccaga
gagacctcatcagctgacgtgccacacagagagtttggactacctgcagcaaaccaagtg
aatcagttcggtaatcaacagagtagcgagtcaagaccccttggtggtgttactttatgt
gatgcgtgtgggagcaatgctcatgtttttgccaactgcccaagctttctgagtgagcca
caaggacaacacatgaatagcgcttacgggaacacaccgggaagaaacgctggtggaggc
atgccaaggcaacatgttggcagctactga
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