Brassica napus (rape): 106381720
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Entry
106381720 CDS
T04128
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like isoform X1
KO
K07466
replication factor A1
Organism
bna
Brassica napus (rape)
Pathway
bna03030
DNA replication
bna03420
Nucleotide excision repair
bna03430
Mismatch repair
bna03440
Homologous recombination
bna03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106381720
03420 Nucleotide excision repair
106381720
03430 Mismatch repair
106381720
03440 Homologous recombination
106381720
03460 Fanconi anemia pathway
106381720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
106381720
03032 DNA replication proteins [BR:
bna03032
]
106381720
03400 DNA repair and recombination proteins [BR:
bna03400
]
106381720
Transcription factors [BR:
bna03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106381720
DNA replication proteins [BR:
bna03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106381720
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106381720
MMR (mismatch excision repair)
106381720
DSBR (double strand breaks repair)
HR (homologous recombination)
106381720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
OB_MEIOB_N
BRCA-2_OB1
RADX
DUF7007
DUF936
Fer4_9
Fer4_10
Motif
Other DBs
NCBI-GeneID:
106381720
NCBI-ProteinID:
XP_013677111
UniProt:
A0A816KDI9
LinkDB
All DBs
Position
C2:43730092..43733039
Genome browser
AA seq
834 aa
AA seq
DB search
MAANLTAGAIGKMLNGEVTTDKEMMPILQVTELKLIQHARKNQESMERYKLSLSDGIQSQ
EGILNTTLNLLVKQGKIQIGSVLRLTRFASNSIQIRRIVIVLELEIIAEQCNIIGNPLPA
HPRKPRNSGHDQTQQQQPGVVSVNTQSNGGFEQQQGRSELNNGTVRHGGGFQQQQATRSE
LNGAVRHGSAQQHQVGERRAFGTASEFPETTTPSARSFASSSAGYGSSRQEQTRAPPTTY
SRPPVQSGYQAQPPSMYANTGPVTRNEAPPTVVPISALNPYQDRWTIKVRVTSKGELRRF
NSTRGGEGKVFSFDLVDAAGGEIRVTCFNDVVDRFFDMIVVGNVYLITKGSLKPARKEYN
HLPNDYEIHLDNASTIQQCYEDDATIPRNQFHFKDISAIESMESNSITDVIGIVSSISPT
GSIMRKNGTEAQKRALQLKDMSGRSVEVTMWGNFCNAEGQRLQSLCDSGVFPVLAVKAGR
ISEFNGKQVSTIGSSQLVVEPDLPEARELRAWYEREGRNAPCISISREFSGSGRLEARKV
ITQIKDENLGTSEKPDWITVSATISFMKVENFCYTACPIVNGDRPCSKKVTNNGDGTWRC
EKCDKCVDECDYRYILQLQLQDHTGVTWATAFQEAGEEIMGMPAKDLYYMKNEDRDEEKF
EDIVRKAAFTKYIFKLKVKEETFSDESRVKATVVKAEKLDYSLDTRSLLEAMNKLRTEDA
NPLTVNPEGSNYRSGAFNSGVGTSGTRETSSADVPRREFGLPAANQVNQFGNQQSSKSRP
LGGVTLCDACGSNAHVFANCPSFLSEPQGQHMNSAYGNTPGRNAGGGMPRQHER
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaatttaacggcgggggcgattgggaagatgttgaacggagaagtgacgacg
gataaagaaatgatgccgattctgcaagtgacggagctgaagcttatacaacatgcccgg
aagaaccaggagagcatggaaaggtacaagctttcgttatcagatgggatccaatcgcaa
gaaggtatacttaataccactttgaaccttctcgtgaagcaagggaagattcagatcggt
tcggtcttaagactcactcgtttcgcctccaacagcattcagattcgaaggattgttatt
gtcttggaactagagattattgcggagcaatgcaatatcattggaaaccctcttcctgca
cacccgaggaagcctagaaactctggccatgatcagacacaacaacaacaacctggagtt
gtttctgttaacacacaaagtaatggtggcttcgagcagcaacagggtaggagtgagctg
aataatggtacagtgagacatggtggtggctttcagcagcaacaggctacaaggagtgaa
ctgaatggtgctgtgagacatggttcagctcaacaacatcaagttggtgagagacgagcg
tttggtactgcttctgagtttcctgaaacaacaacaccttccgctagatcatttgccagc
tctagcgctggttacggaagctctaggcaggagcaaacgagggctcctccaacgacttat
tctcgtccgccagttcagtctggttatcaggcccagccaccatccatgtacgctaacacg
ggaccagtgactaggaacgaagctcctcccacggtagttcctatttctgctctgaaccct
taccaggatcgctggaccatcaaggtgagagtcacgagtaaaggagagctcaggcgtttc
aacagcacccgtgggggggaagggaaggtgttcagttttgatctagttgatgccgctggc
ggagagattcgggtgacttgttttaatgatgtggttgataggttctttgacatgattgtt
gttggtaatgtttacctcatcacaaaggggagtttgaagcctgctcgtaaagagtataat
catctccccaatgattatgaaatacatttagacaacgcttcaacgattcagcaatgctat
gaggatgatgctaccattccgcggaatcagttccatttcaaggacataagtgctattgaa
agcatggagagcaacagcatcactgatgtaatcggcatcgtctcgtccatcagtccgaca
gggtcaatcatgcggaaaaacggaaccgaggcgcagaaaagagcgcttcagttgaaggat
atgtcaggcagaagcgtggaggtaaccatgtggggtaatttctgcaacgcagaaggacag
agattacaaagtctttgcgattctggtgtgttccctgttctcgctgtgaaggcggggagg
atcagtgagtttaacgggaagcaagtgagcaccattggatcaagccaactcgtcgtggag
ccagacttacctgaagccagagagctgagggcgtggtacgagagagaaggacgtaacgct
ccttgtatctcgatatctagagagttctctggttctggcaggctagaggctcgcaaggtg
atcactcaaatcaaggacgagaatctagggacctcggagaagccggactggatcacagtc
agtgccaccatttcattcatgaaggttgagaatttctgctacacggcttgtcctatcgtg
aatggagaccgtccgtgcagcaaaaaggtcaccaataacggagacgggacttggcgatgc
gagaaatgcgacaagtgcgtggatgagtgtgactacaggtatatattgcagctgcagtta
caggaccatacgggagtgacgtgggccacagcgtttcaggaggctggtgaggagataatg
ggaatgcctgcgaaagatttgtattatatgaagaatgaggatcgtgatgaggagaaattt
gaagacatcgtccgcaaggccgctttcaccaagtacattttcaagctgaaggtgaaggaa
gaaacttttagtgacgaaagccgtgtgaaagcaacagttgtgaaagctgagaagctggac
tattctttagacaccaggtccctgctagaggcaatgaataaactcagaacggaagatgca
aatcctctcactgtaaaccctgagggttccaactacaggtctggtgcgtttaattccggt
gttggaacctccggaaccagagagacctcatcagctgacgtgcctcgcagagagtttgga
ctacctgcagcaaaccaagtgaatcagttcggtaatcaacagagtagcaagtcaagaccc
cttggtggtgttactttatgtgatgcgtgtgggagcaatgctcatgtttttgccaactgc
ccaagctttctaagtgagccacaaggacaacacatgaatagcgcttacgggaacacaccg
ggaagaaacgcaggtggaggcatgccaaggcaacacgaaagatga
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