Brassica napus (rape): 106382022
Help
Entry
106382022 CDS
T04128
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106382022
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106382022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106382022
NCBI-ProteinID:
XP_013677432
UniProt:
A0A816JQ29
LinkDB
All DBs
Position
C4:complement(35491493..35493103)
Genome browser
AA seq
331 aa
AA seq
DB search
MTTLPYADVDCNLRALAGRAEGFGRFAVGGLHGNLYVVTSLADDGPGSLREGGRRREPLW
IVFAVSGTIHLNSYLSVSSHKTIDGRGQRIKITGKGIRLKECEHVIICNLEFEGGRGHDV
DGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFGQHDKTMLIGADPSHVD
DRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA
GVKKKTFEYYPEKAADREEVRAGLVRSENDLFLNGAQASLLTGAGGECVFHPSEHYPTWT
VEPPSDTLKQIIKICTGWQSLSSPSDHGVPK
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgctaccatacgccgacgtcgattgcaacctcagagctttagccggccgtgcc
gagggtttcggccgcttcgccgtcggtggtctccacggcaatctctacgtcgtcacttct
ctcgcagatgatggacctggatctctccgcgaaggaggaaggaggagagagccgttatgg
atcgtgttcgcggtctccggaactatacacctcaattcatacttgagcgtatcgtctcac
aagacgatcgatggaagaggacaacggatcaagatcactgggaaagggataaggctgaag
gaatgtgaacatgtcatcatttgcaatttggagtttgaaggtggtagaggccatgatgtt
gatgggattcagattaagccaaagtctagacacatttggattgataggtgtagcttgaga
gactacgatgatgggcttattgatatcactaggcagagcactgatatcactgtttctaga
tgttattttgggcagcatgataagacgatgttgattggagcggatccttctcatgttgat
gataggtgtatcagagtgacgattcaccattgtttctttgatggaactaggcagaggcat
cctcgtctcaggtttgggaaagttcatttgtataacaattatacaagaaactgggggata
tatgctgtctgtgctagcgtagaagcgcaggtgttctctcaatgcaatatatacgaagca
ggagtgaagaagaaaacttttgaatactaccctgagaaggctgctgacagggaagaagta
agagctgggttggttcgatctgagaatgacttgttcttgaacggagctcaagcttccttg
ttgacaggggccgggggagaatgtgtgttccatccaagcgagcattacccgacatggacc
gtggagcctccatcggatactctcaagcaaatcatcaaaatctgtactggttggcaatca
ttatcttctccttcagatcatggcgttcctaagtag
DBGET
integrated database retrieval system
