Brassica napus (rape): 106382189
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Entry
106382189 CDS
T04128
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit D
KO
K07466
replication factor A1
Organism
bna
Brassica napus (rape)
Pathway
bna03030
DNA replication
bna03420
Nucleotide excision repair
bna03430
Mismatch repair
bna03440
Homologous recombination
bna03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106382189
03420 Nucleotide excision repair
106382189
03430 Mismatch repair
106382189
03440 Homologous recombination
106382189
03460 Fanconi anemia pathway
106382189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bna03000
]
106382189
03032 DNA replication proteins [BR:
bna03032
]
106382189
03400 DNA repair and recombination proteins [BR:
bna03400
]
106382189
Transcription factors [BR:
bna03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106382189
DNA replication proteins [BR:
bna03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106382189
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106382189
MMR (mismatch excision repair)
106382189
DSBR (double strand breaks repair)
HR (homologous recombination)
106382189
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
DUF8448
Motif
Other DBs
NCBI-GeneID:
106382189
NCBI-ProteinID:
XP_013677615
UniProt:
A0A816IZD1
LinkDB
All DBs
Position
C9:complement(4589784..4592796)
Genome browser
AA seq
622 aa
AA seq
DB search
MQNSVTPDAISAVLSNPSFDSSSDRSEIVVQVVDLKPIGNRYTFSANDGKTRVKAMFTAS
LTPEIVSGKIQNLGLIRLVDFTVNDISSKSTKYFLVTKCETVASVLDSEIDLEGKKDEEE
GGEAKRQKLDHTPVNDVKETGITLKPKQEFVSKSASQIITEQRGNAAPAARMAMTRRVHP
LVSLNPYQGSWTIKVRVTNKGTMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKF
YDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEETFVPETKFNFVP
IEELGMYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESKKTVVVSLWND
LATGVGQELLDMADKSPVIAIKSLKVGDFQGVSLSTIRRSNVVINPESPEAKKLKSWFDS
EGKEASMSSIGSGISPLAKNGSWSMYTDRVLLSHITSNPSLGEEKPVFFSTRGYISFIKP
DQTMWYQACKTCNKKVTEAMDSGYWCEGCQKKDEECSLRYIMVVKVSDSTGEAWFSSFND
EAENIIGCSADELNKLRSEGGEVNEFQTKLKEATWSSHVFRISVTQNEYNGEKRQRVTVK
GVAPVDFAAEARLLLQDISKKN
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcagaactcggtgaccccagatgctatctccgccgtattgtcaaacccatcctttgat
tcctcttccgatcgatctgagatcgtcgttcaagtcgtcgatctcaagcctatcggcaat
cgttatacatttagtgcaaacgatgggaagacgagagtgaaagctatgtttacagcttcg
ttaacacctgagatcgtttctgggaagattcagaatctgggtctgatccgtctcgttgat
ttcactgttaacgatatctccagcaaatcaacaaagtattttcttgtgacgaaatgtgag
actgttgcgtctgtgcttgattctgagattgacttggaaggtaagaaggacgaggaggaa
ggtggtgaggcaaagaggcagaagctagatcacactcccgtgaatgatgttaaagagact
ggaatcacgttgaaaccgaaacaggagtttgtttcaaaatcagcttctcagataatcact
gaacagaggggaaatgctgcaccagctgcaagaatggctatgaccagaagagtgcatcca
cttgtgtccttgaatccctatcaaggaagctggaccatcaaagtccgagtcactaacaag
ggaaccatgagaaactacaagaacgctagaggagaaggatgtgtcttcaatgtcgaacta
acagatgaagaaggaacacaaattcaagctacgatgttcaatgatgctgcccggaagttc
tatgacaggttccagctcggaaaggtctattatatctctaggggatcgcttaaacttgct
aacaagcagttcaagactgttcagaatgattacgagatgacactgaatgaaaactcggag
gtggaggaagctagtaacgaggaaacgtttgtccctgagacgaaattcaactttgtaccc
attgaagagttgggtatgtacgtgaatcagaaggagcttattgatcttatcggagttgtt
caaagtgtttcgcctaccatgagtattagaaggagaactgacaatgagatgatacccaag
agggatataactttggctgatgagtcaaagaagaccgttgtggtgtctctgtggaacgac
ctggcaaccggcgtaggtcaagagcttctggatatggctgataagtcccctgtgattgca
atcaagtctctcaaagttggagactttcaaggtgtttcgttgtccaccatcaggagaagc
aatgtggtgataaatcctgaatcaccagaggcgaaaaagctgaaatcttggtttgattct
gaaggcaaggaggcatccatgtcttccattggctcagggattagcccacttgctaagaat
ggatcttggtctatgtatacagaccgagtccttctctctcacatcacaagcaacccatct
ctaggagaggaaaagcctgtgtttttcagcacaaggggttacataagcttcatcaaacca
gaccagacaatgtggtaccaagcgtgtaagacttgtaacaagaaagtgactgaagcaatg
gactctggttactggtgtgaaggttgccagaagaaagatgaagaatgcagcttaaggtac
ataatggtggtgaaagtctctgactcaacaggagaagcttggttttcctcattcaacgac
gaggctgagaacattattggatgttcagctgatgaactcaacaaactaagatctgaggga
ggtgaagtaaatgagtttcagacaaagctgaaagaagcaacgtggtcgtctcatgtcttc
aggattagtgtcactcagaatgagtacaatggtgagaagaggcagagggtgactgtgaaa
ggagtggctcctgttgattttgctgctgaagcaagattgttgctccaagacatctccaag
aagaactaa
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