Brassica napus (rape): 106382584
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Entry
106382584 CDS
T04128
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106382584
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106382584
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106382584
NCBI-ProteinID:
XP_013678071
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Position
A9:33876991..33880501
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AA seq
476 aa
AA seq
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MMLQRSCIVLFSLSLFVPHMGFAMLNKTLLLIPHPDPELVAHDVHWRVNASIWRRQAMDT
TDQAGSNQCFTGNPIDDCWKCDTNWPNNRQRLADCGIGFGQYALGGKGGRFYFVTDSSDD
DVVDPKPGTLRYGVIQVEPLWIVFPSNMMIKLKHELIFNSYKTLDGRGANVHIVGGGCIT
LQYVSNIIIHNIHIHHCHPSGNTNIRSSPTHYGLRTESDGDGISIFGSKDIWIDHCSLSR
CKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLVQRM
PRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDW
KGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVDPKSASFIDQITFHCGVLGVGGRNN
NLGMWTTTGSEGSGGLDSYNDYTDEMSGTGSTNRLSFSIIVIAFMFNLISYSFMLL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttcaaagaagctgcattgtacttttctcactttctctgtttgttccacacatg
ggtttcgccatgctcaacaaaactctccttctcataccacatcccgacccagagctagtc
gctcatgatgttcattggagggttaatgcctctatatggagacgtcaagctatggatacg
acggaccaggccggttcaaatcagtgcttcacgggtaacccaatcgatgactgttggaaa
tgtgacacaaactggcctaataaccgacaaaggctagccgattgtggaatcggtttcgga
cagtatgccttgggaggcaaaggcggccggttttacttcgtcactgattcctccgacgat
gatgtcgtcgaccctaaaccgggcactctcagatatggagtgatacaagtagagccactg
tggatagtgttcccaagcaacatgatgataaaattaaagcatgagctaatattcaacagt
tacaagactcttgatggaagaggagctaatgttcatattgttggtggtggttgcatcacc
cttcaatatgtctccaatatcatcattcacaacattcatatccaccattgtcacccatcc
gggaatactaacatacggtcaagtccaacgcactacggattaagaacggaatcggacggt
gatggtatctccatcttcggatcaaaggacatatggattgaccattgttctctatcgaga
tgtaaagatgggttgatagatgctgtgatgggatccacagggattacaatatcgaacaac
ttcttctcacaccacaatgaagtcatgcttcttggtcacagcgatcactacgagccagac
agtggcatgcaggtaaccattgcgtttaatcactttggagagaaattggtacaaaggatg
ccacgatgtcgacgtggttatatccatgtggttaacaacgattttactcaatgggaaatg
tatgcgattggcggtagcggtaacccgaccattaatagtcagggtaaccgttataccgcc
ccaaccaacccctttgccaaagaggtgactaaaagagtagaaacgcctgatggcgattgg
aaagggtggaactggagatcggagggagacatcttggttaatggagcgttcttcgtggca
tctggagaaggtgctgagatgaggtacgagaaggcgtatagcgtggaccctaaatctgcc
tcgttcatcgaccaaatcacatttcattgcggcgttctcggcgttggtggcaggaataac
aatttggggatgtggactactactggatccgaaggtagtggcggtctagattcttataat
gactacaccgatgaaatgtctggcaccggttcaaccaaccggttatctttctcgattatt
gttatagctttcatgttcaatttgatatcatattcgttcatgttgttgtaa
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