Brassica napus (rape): 106382625
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Entry
106382625 CDS
T04128
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
bna
Brassica napus (rape)
Pathway
bna03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106382625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106382625
03036 Chromosome and associated proteins [BR:
bna03036
]
106382625
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106382625
Coactivators
SAGA/TFTC/STAGA complex
106382625
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106382625
STAGA complex
106382625
TFTC complex
106382625
SAGA complex
106382625
SLIK complex
106382625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
eIF2A
RAB3GAP2_N
WD40_like
LisH
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
106382625
NCBI-ProteinID:
XP_013678111
UniProt:
A0A816KK45
LinkDB
All DBs
Position
C2:complement(55208283..55213021)
Genome browser
AA seq
664 aa
AA seq
DB search
MDPEQVDEFVMGYLKKKGFNSAAKHLQESLHNNNGSSFSSIDYPNDPELTKLIRSFSQSE
NDPSRYREGYSKLRSWGYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARSFFNSFR
KDHEMVHLRDLQKLGGVLAPSHLQEMEFARSLRQSKINIKICQYSYDLLIQYLHRTESTL
MLGIINEHINFQVYSGQPNSASDDIEAVTIVGSFHETADHVNQKEIHWGLLEDSLEDRLE
KTGGLLSDSEKGQGESKAGDDSKKRSAEIGKQGSSTKKLKKDKAGTATTKVARQETSTVL
SSMPRVKPELAMPVMSTDVEESILEDLRNRVQLSSVAMPSVSFYTFVNTHNGLNSSSISH
DGSLVAGGFSDSSIKVWDMAKIGQAGSCALQDDNNQIVGKNGRRNYTLLVGHSGPVYSAT
FSPPGDYVLSSSADTTIRLWSTKLNANLVCYKGHNHTVWDAQFSPFGHYFASCSHDRTAR
IWSMDRMQPLRMMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRS
MVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLMGHNSCVWTLSYSGEGSLLASGS
ADCTVKLWDVSSSTKLTKAEEKNGNSNRLRSIRTFPTKSTPVHALRFSRRNLLFAAGAVS
KHSS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaagtagacgagttcgtcatgggctacttgaagaagaaaggcttcaac
agcgctgctaaacatctccaagaatctcttcacaataacaatggcagcagcttcagctct
atcgattatcccaacgatcctgagctcaccaagctcatccgctccttctcccaatcagag
aatgatccaagtcggtaccgtgaaggttacagcaagctaaggtcatggggttataactca
cttgatctttataagcatgaattgcttcgagtgatgtatcctgtgtttattcattgttat
atggatctagtggggaaagggcacactcaagaagcgagatccttctttaacagcttccgc
aaggatcatgaaatggtacatttacgggatcttcagaagctgggaggcgttcttgctcca
tctcatctgcaggagatggagtttgctcgttcccttagacaaagcaagatcaacatcaaa
atttgtcagtattcgtatgatctgttgattcagtatctacatagaacagagtctactctg
atgcttggtattatcaacgagcacatcaatttccaagtgtactcgggacagcctaactcc
gcatctgatgacatagaggctgtcaccattgttgggagttttcatgagacagctgatcac
gtcaatcaaaaagaaatacactggggattgcttgaggactcgctggaagatcgcctggag
aagacgggaggtctactgtctgattccgagaagggacaaggagaaagtaaagctggggat
gatagtaagaaaagatccgccgaaattggaaagcaaggctcttccacaaagaagttaaag
aaggacaaagcaggaactgcaacaacaaaagttgcacgtcaggagaccagcacggtgttg
tcgtcgatgccacgtgtgaaaccggaacttgccatgccagtaatgtctacagatgtagag
gaatcgatccttgaagacctgagaaaccgtgtgcagttgagtagcgtcgcaatgccctct
gtcagcttttatacatttgttaatactcataacgggttaaacagttcatctatatctcat
gatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggacatggcg
aagataggacaagctggcagttgtgctttgcaggatgacaataatcaaatcgttggaaaa
aatgggagaagaaattatacattactagtgggacactcagggccagtttactcggccact
ttcagtcctcccggagattatgttttatcgtcttcagcagatacaacaataaggctgtgg
agcacaaaattaaacgccaatctcgtgtgctacaagggacataatcacactgtatgggac
gcccagtttagcccttttgggcattactttgcaagctgttctcatgatcgtactgcacgg
atttggtcaatggatagaatgcaacctctgcgtatgatggcagggcatctctctgatgtt
gattgtgtacagtggcatcctaattgtaactacattgcaaccggttctagtgataagacg
gttagactctgggatgtacaaacaggggaatgtgtcaggatattcattgggcacaggagc
atggttttgtcattggcgatgtcaccagatgggagatatatggcctccggtgatgaagat
ggaaccataatgatgtgggacctctcaacagctcgctgcatcacacctctcatgggccat
aactcatgtgtctggactctctcttacagcggcgagggctctcttctggcttctggatct
gcagactgcacagtgaagctgtgggacgtctcctcaagtaccaaattgacaaaggctgag
gaaaaaaatgggaactcaaacagactgcgatcaatcagaactttccccaccaagtccaca
ccagttcacgctctccgattttctcggagaaatctgctgtttgctgcaggagcggtctct
aaacactcgagctga
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