Brassica napus (rape): 106383476
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Entry
106383476 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106383476
09122 Translation
03013 Nucleocytoplasmic transport
106383476
03015 mRNA surveillance pathway
106383476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106383476
03041 Spliceosome [BR:
bna03041
]
106383476
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106383476
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106383476
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106383476
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106383476
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
106383476
NCBI-ProteinID:
XP_013679030
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All DBs
Position
C2:1690894..1694182
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AA seq
427 aa
AA seq
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MGDVRDNEAYEEELLDYEEEDEKVLDSGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKDLLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHEKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLGEMEKNRKLNDLLDALDFNQVVIFVKSVSR
ARELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQARFEVDIKQLPENID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgttagggacaacgaagcatatgaggaggagctcctagactatgaggaagag
gacgagaaggtcttggattctgggaataaagttaacggcgatgccgtgaagaaaggttac
gtggggatacacagttctggattcagagacttccttttgaaacctgagcttctacgagct
attgttgattctggatttgaacatccatctgaagtgcaacatgaatgtatccctcaagct
atcttgggtatggatgttatctgccaagctaaatctggtatggggaagactgctgtcttt
gtgctttcgactctgcaacagatcgagccaactcctggccaggtgtctgcacttatactg
tgccatacaagagagttagcttatcagatctgcaatgagttcgtgcgtttcagtacctat
ctgcctgatactaaggtttcagtgttctatggaggagtcaacaacaaaattcacaaagac
ttgctgaagaacgaatgtcctcacattgttgttggaacacctggtcgtgtgcttggactc
gccagggacaaagatctctcgttgaagaatgttaggcattttattcttgacgagtgcgat
aaaatgctggagtctctcgacatgcggagggatgtgcaggagattttcaagatgactcct
cacgagaaacaagttatgatgttctcagcaactctcagcaaggagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgactctt
catgggcttgtccagcattacatcaaactgggcgagatggagaaaaaccgcaagttgaat
gaccttcttgacgcactggacttcaatcaagttgtcatatttgtgaagagcgttagcaga
gctcgggagctgaacaagctgcttatcgaatgcaatttcccctcaatatgcattcactct
ggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaagggcacaagaga
atactggtggcgacagacttggtagggagaggcattgacattgagcgtgtcaacattgtc
atcaactatgacatgccagactctgctgatacatatcttcacagggttgggagagctggt
aggtttggaacaaagggtctagcaatcacatttgtggcatctgcttcggactcggaagtt
cttaatcaggtgcaagccaggttcgaggttgatataaagcaacttcctgagaatattgat
acttctacttacatgccgtcctaa
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