Brassica napus (rape): 106384230
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Entry
106384230 CDS
T04128
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106384230
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106384230
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
NuBaID_C
DUF4135
Motif
Other DBs
NCBI-GeneID:
106384230
NCBI-ProteinID:
XP_022555175
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Position
C3:complement(24730299..24732644)
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AA seq
395 aa
AA seq
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MGAYFGAFTVFIFCLLGFSANAVYISIGSSSGSDITQALLKAFTTACQSPIPSRVVIPKG
EFKLGEIQMRGPCKAPVEITIQGTVKADGNAIQGKDTWIVFGNINGFKLNGGGAFDGEGN
AAWRVNNCHQTFNCKKLPISIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTMDHINII
APKDSPNTDGIHLGRSDGVKILNTFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSL
GRYGNEQDVSGIRVINCTLQQTDNGLRIKTWPSAACSTTASDIHFENIIVKNVMNPILID
QEYCPWNQCNKQKPSTIKLANISFKQIRGTSGNKDAVKLLCSRGYPCQNVEIGDIDIRYN
GADGPATFQCSNVSPKLMGTQSPKACSGPVTNLPQ
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcatattttggagcttttacagtttttattttctgtttgttgggattttcagcc
aatgctgtatacatcagcattggctcctcttcaggttctgacattactcaggcacttctg
aaagcattcacaacagcatgccaatctccaataccgagcagagtggtgatcccaaaagga
gagttcaagcttggtgaaatccagatgaggggtccatgcaaagctccagtcgagatcacc
attcaaggtactgtcaaagctgacggtaacgccatccagggaaaggacacatggattgtc
ttcggcaacattaatggctttaagttgaacggaggtggagctttcgatggtgaaggaaac
gcagcttggagggttaacaactgtcaccagactttcaactgcaagaaacttcccatcagt
ataaggtttgatttcgtggagaacgctgagatcagagacatatcttcaatagatgccaag
aacttccacatcaacgtgctcggtgccaagaacatgaccatggatcacatcaacatcatt
gctcctaaagacagtcccaacactgacggtatccatttgggaagaagtgacggagtcaag
atccttaacacattcatctccaccggagacgactgtatctccgttggagatgggatgaag
aaccttcacgtggagaaagtcacctgcggtccaggacatggaatcagtgtcggaagcctt
ggaaggtacggaaacgaacaggatgtcagcggcattagagtcataaactgcactctccaa
cagactgacaacggactgaggatcaagacatggccgtctgcagcttgctccaccaccgcc
tccgatattcatttcgagaatatcattgtcaagaacgttatgaacccaatcctcatcgac
caggagtactgcccttggaaccaatgtaacaagcagaaaccatcaacgattaagcttgcc
aacatcagcttcaagcagatcagaggaacatcagggaacaaggatgcagtgaagctattg
tgcagcaggggatacccatgccagaacgttgagattggagacattgacattaggtacaac
ggagcagatggtccagcgactttccagtgctcaaacgtgagccccaaactcatgggaact
cagagccctaaagcttgcagtggtccagtgaccaacttaccccaataa
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