Brassica napus (rape): 106384235
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Entry
106384235 CDS
T04128
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106384235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106384235
03009 Ribosome biogenesis [BR:
bna03009
]
106384235
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106384235
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 related factors
106384235
Complex B
106384235
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106384235
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106384235
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
WHD_HA2
AAA_29
T2SSE
ATPase
nSTAND_NTPase5
SRP54
AAA_30
AAA_16
Cas3-like_C_2
AAA_7
ResIII
AAA_11
FtsK_SpoIIIE
ABC_tran
PhoH
TrwB_AAD_bind
NACHT
Myosin_head
TsaE
AAA_23
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
106384235
NCBI-ProteinID:
XP_013679687
LinkDB
All DBs
AA seq
433 aa
AA seq
DB search
MMMKKKSERRNLPVWGQKEEFQRTFKENQMVMVTGETGSGKTTQIPQFVLEAMMDEIPRS
DDQLLVGCTQPHRVAAMSAARRVAEEMDVKIGEEVGYTVRFEDRSSPRTVLKYLTDVMLL
REAMVDPLFLRYKVIIVDEVHDRSLATDLLISSILNRTLISRPDLKLVVMSATLQVFNKR
YFRGAPLIKIPSGRLLHPVEILYTREPVMDYLESAISKVIEIHMCEPTGDVLVFLTGKEE
IEHACSRIVRSLGDQVTVVPLYSSLPPALQHKIFDPTPPPLSVRKIIVSTNVAETSLCMD
GIVYVVDPGFSKQKNYSFLTTDEVWFVSRISQASAYQRAGRAGRKCFRLYTEKTFNDFMD
KEIPEILRSNLVKTVLTLKRLGVEDLTFFEYIDPPSTRMLFRGMEDLFHLGAMDDQGNLT
NIGHMMESLEEPL
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgaagaagaagtcagaacgtaggaatctcccagtatgggggcaaaaagaagag
tttcaacgaacattcaaggagaatcagatggtgatggtgacgggtgagaccggtagtggt
aaaacaacgcagatcccacagtttgttttagaagcaatgatggatgaaatccctaggtct
gatgatcagttgttggttgggtgcacgcagcctcatcgagttgcagccatgtccgcggca
cgtcgtgtcgctgaagagatggatgtaaagatcggggaagaagtcggttacacagtccgt
tttgaggatcgcagtagcccccgaacggtgctcaagtacctgactgatgtaatgcttctg
agggaagctatggtggatccactctttttgagatacaaagtgattatcgttgacgaagtt
catgatagaagtttagccacagatttacttattagtagtattcttaaccgcaccttgatt
agccgacctgatcttaagcttgttgttatgagtgcaaccctacaggtttttaacaaaagg
tattttagaggtgcgcctctcatcaaaatcccttctggtaggctcctccatccagtggag
atcttgtacactcgagaacctgtgatggactatctcgagtctgccataagcaaagttatc
gagattcacatgtgtgaaccaacaggtgacgttcttgttttcttgaccgggaaagaagag
attgaacatgcttgcagcagaattgtccgtagtcttggagatcaagtcaccgttgtgccc
ttgtattcctctcttccaccagctttgcaacacaagatcttcgatcctacaccaccacca
ctttcagtgagaaagatcatcgtctccaccaacgttgctgagacttctttgtgcatggac
gggattgtttatgtggttgatcctggtttctccaagcaaaagaactatagttttctcact
actgacgaagtctggtttgtgtcccgaatatcacaagcaagtgcttaccagagagcagga
cgtgccggtaggaaatgttttaggctctacactgagaagactttcaatgacttcatggat
aaggagattcctgagatccttagatcaaaccttgttaaaacagttttgactttgaaaagg
ctaggggtggaggacttgacattttttgaatatatagatcctccttccactcgaatgctc
tttcggggcatggaggatttgtttcatcttggagcaatggatgaccaaggtaacttgaca
aatataggccacatgatggagagtttggaagagccactttga
DBGET
integrated database retrieval system
