Brassica napus (rape): 106384532
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Entry
106384532 CDS
T04128
Name
(RefSeq) uncharacterized protein LOC106384532 isoform X3
KO
K06100
symplekin
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106384532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bna03021
]
106384532
03019 Messenger RNA biogenesis [BR:
bna03019
]
106384532
Transcription machinery [BR:
bna03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106384532
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106384532
U7-dependent histone pre-mRNA processing factors
106384532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
AAA_lid_9
Motif
Other DBs
NCBI-GeneID:
106384532
NCBI-ProteinID:
XP_022555621
LinkDB
All DBs
Position
C3:56186799..56197902
Genome browser
AA seq
1195 aa
AA seq
DB search
MIQFHHRGKVDRWVGELWTWMVKFKDVVFSTALEPGSVGVKVLALKFMETFILLFTPDAS
DPENFSNEGSRQMFNISWLAGGHPILNSATLLSEANRTFGILQDLVQSAGRLPGALTVAV
VSCLAVVARKRPVHYNTVLSVLLDFHPNLVTVKGCHAASVQYSIRTALLGFLRCTSSPMI
ESRDKLLRALRAMNASDVADQAVRQVDKLIRNNERFARENWSGKSNQAISHPNSWDLSKK
RKMSQGEDDTINGEAAPKRLRHNTNMHLTPQVKISDSPRGPVSINGISPANHPSDSEPTP
VEQMVSMIGALLAEGDRGAASFDILISQLHPDMLADIVITSMKHLPSSPPTLTTSLATPA
DIVDSMRSPTLQPQLPFDPTLPAGLSVSDVPSLNSAVADPRRDPRRDPRRTDPRRLNSSV
GEGKEPVPVQMDISTLPGYPLSVPAVTAGASSSVHLTTKEHSQNKVGGSSIIRIVDQPDC
REDLFTAPGECVYPSKGKSSLDVPHSPCKDDEGIRETKFAGSERKCRDDLVSIPDFDQHS
PSESGPDFDLQPPVASDITAEEESYRELASVPSYVELTTEQSETVGKLALERIIESDRHV
CGFDCNKIRMPLIARLIAKIDAGNDVAAILREHISVDHREFKGHELVLHILYHLHSMANL
DTDETSSYAAVYENFLITVARSFLDALPASDKSFSRLFGEAPHLPDSAIKLLDELCSTRH
ERTGREISDSERVTQGLGAVWSLILVRPNERKAFLAIALNCSVHSEEDIRAKAIRLVTNK
LYHLTYISEHVEKFATDMLLTAVNSEADLSQTGFIAEGIKTEAKSQITSTIDSPSSRTSD
THSQQDLQTSRDVSVLSFAEAQRLISLFFALCKKKPSLLRLVFEVYGKAPKTVIQAFHRH
IPILIRELGSSYKELLHIISDPPKGSENLLTLVLQILTQEVAPSSDLIATVKHLYDTKLK
DVSILIPLLSSLTKDEVLPIFPPLLNLSPEKFQLALGHILQGSAHTGPALTPAEVLIAIH
EVVPEKGGPPLKKITDACSACFEQRTVFTQQVLAKALGQMVDRTPLPLLFMRTVIQAIDA
FPTLVDVVMEILSKLVNRQIWRLPKLWPGFLKCVSQTQPHSFPVLLELPMPQLESIMKKF
PDLRPSLATYANQPTIRASLPNPALSVLGLENGQDSRSQMHPSDAASSIHGAALT
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgatacagtttcatcatcgtggtaaagttgatcgttgggttggggaactatggacatgg
atggttaagttcaaagatgttgtcttttctactgcattggagcctggtagcgtaggggtg
aaagttttggcgctaaagtttatggagacgtttattttgctatttactcctgatgcatct
gatcctgagaatttttccaacgaagggagtaggcagatgtttaacatatcctggcttgct
ggcggtcaccccattctaaattcagcaacgcttttgtctgaagcaaatagaacatttggt
atcttacaagatctcgtacagtcggctggtcgtttaccgggtgcactgacggtagctgtt
gttagttgtcttgcggtggtagcgaggaagaggcctgtccactacaacactgtcctttct
gttctgctggattttcacccaaatcttgtgacagtaaaggggtgccatgctgcaagcgtt
cagtattccattagaactgccttactgggatttcttagatgtacttcctcacctatgata
gagtcaagagacaagcttcttagagcgcttcgagcaatgaatgcttcagatgttgctgat
caagctgtccgtcaagttgataaattgatcagaaataatgagcgctttgcacgtgaaaat
tggtcaggcaagagtaaccaggcgattagtcacccaaattcttgggatttgtcaaagaaa
cgaaaaatgtcccagggtgaagatgatacaatcaatggagaggctgctccgaagcgctta
cgccataatactaacatgcatttgactccgcaagttaaaataagtgattctccacgtgga
ccggtctctatcaatggcatatcccctgcaaaccatccttcggacagtgagccgactcca
gtggaacaaatggtttctatgattggtgctttgcttgctgaaggagacagaggagctgca
tcatttgatattctcatttctcagctccatccagatatgctcgctgatattgtaataaca
agcatgaaacacttgcctagtagccctcctacattgacaacttcactggctactccggcg
gatatcgtggattccatgcgttccccaactcttcagccacaacttccttttgatccaacc
cttcctgcggggttatcagtttccgatgtgcctagtttgaatagcgcagttgccgaccct
agacgtgacccaagaagggatccccgtcgcacggatccaagacgtttaaattcatctgta
ggtgaaggtaaagaaccagtcccagttcagatggacatctcgaccttaccaggctatcca
ctttcggttcctgctgtcacggcaggggctagtagttcagtgcatctaacaacaaaagag
catagccaaaacaaggtggggggaagttcaattatcagaatagttgatcagcctgattgc
agggaggatttgtttactgctcccggcgagtgtgtttatccctcaaagggcaaatcatct
ttagatgttccacactctccttgcaaggatgatgaagggatcagagaaacaaagtttgca
ggttctgaaagaaagtgcagggatgatctggtgtctatcccagattttgatcaacattcg
ccttcagaatcaggcccagattttgatctacaaccccctgttgcgtcagacattactgca
gaagaggaaagctatcgagagttggcatctgttccatcatatgttgaacttaccacagaa
caaagcgaaactgttggaaagttggctttagaaaggataattgaatcagatagacatgtc
tgcgggtttgattgtaacaagatacgcatgccattgattgcccgattgattgctaaaatc
gatgctggcaatgatgttgcagccatactaagagagcatattagtgtggatcatcgggaa
ttcaaggggcatgaacttgttttacatattttgtaccatctgcattctatggcgaatctg
gacacagatgaaacctcttcctatgctgctgtgtatgaaaattttctcataacagtggca
agatcatttctggatgctcttcctgcttccgacaagtctttcagcagactttttggagaa
gctccacatctacctgattctgccataaagctactggatgaactctgctccactcgtcat
gaacgaactggaagagaaatcagtgatagtgagcgtgttacccaagggcttggtgcggtt
tggagcttaattctagtgcgtccaaatgagcgaaaagcattcttagccatagcattgaat
tgttctgttcattccgaagaagacatccgtgcaaaagctattcgacttgtcacgaacaaa
ctgtatcaccttacatacatttcagagcatgttgagaaatttgcaacagatatgttgctg
actgctgtgaattctgaggcagatctctcacagactggttttattgcagaaggaattaaa
acagaggctaaaagtcagataacttcgacaatcgactctccatcttctagaacctccgat
actcactctcagcaggatctacaaacttctcgtgatgtttctgttttatcatttgctgaa
gctcagagacttatttctctgttctttgctctatgtaaaaagaaacctagtctcctacga
cttgtctttgaagtttacgggaaagctccaaaaacagtaatccaggcttttcatcgacat
atacctatcttgatacgagaattaggttcatcttataaggaactgctccatataatatct
gatcctcctaagggaagtgaaaatttattgacattggtgttgcaaatattgacacaagaa
gtggcaccttcgtcggatttgattgctaccgtaaagcatctatatgacactaagctaaag
gatgtttcaattcttattccgttgctttcttcactcactaaagacgaggttttgcctatc
tttccgccacttcttaatctttcacctgagaagttccaacttgcactaggtcatatatta
cagggttctgctcacacaggtccggcccttacacctgccgaggtactgattgctatccac
gaggttgttcctgagaagggtgggccaccactgaaaaagataacagatgcatgttcagct
tgctttgaacaacgcactgttttcacgcagcaagtcttagcaaaggctctcggtcagatg
gttgatcgaacacctcttcctttactcttcatgagaacagtaattcaggcaatcgatgct
ttcccaacactggttgacgttgtcatggaaatcctttccaagttagtgaataggcagatc
tggagactgccaaaactgtggcctggcttcttgaaatgtgtgtctcagacacagccacat
tcattccctgtcttgttggagttgccaatgcctcaactcgaaagtatcatgaagaagttt
cctgatctaagaccttctcttgctacttatgcgaatcagccaactatcagagcttctcta
ccaaatccagctctttcagttcttgggcttgaaaatgggcaagattcacgttcgcaaatg
cacccttcagatgcagcttcttctattcatggggcagccttaacgtga
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