Brassica napus (rape): 106384870
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Entry
106384870 CDS
T04128
Name
(RefSeq) protein RRP6-like 2 isoform X2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106384870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106384870
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
106384870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
106384870
NCBI-ProteinID:
XP_013680237
UniProt:
A0A078HL20
LinkDB
All DBs
AA seq
854 aa
AA seq
DB search
MSDGNMDVEDSPEVSSLEALVVDGSSFSRNLSKLSSSSRLIPTSKDFHFFYNFDDFKRPT
DDVSATSQSLLETIGDSEHVLGKSITFPGDIEEDDADDWLCNVNDEFLESFDVSVDEFQR
VRKEEEEIGRTLLPPASDFEEVGFQMVYGKKKKPLVGGSGRDGGSVIDVKVAERSLSGKA
KVPFHVPTIKKPQEEFNILVNNANQPFEHVWLERSEDNQRVLHPLEKLSVVDFVGNSVSQ
MEPVKPLPLEETPFKLVQDVKDLKDLVSKLRTVEEFAVDLEHNQYRSFQGLTCLMQISTR
TEDYIVDTFKLRVHIGPYLREIFKDPKKRKVMHGADRDIVWLQRDFGIYVCNLFDTGQAS
RVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPLPKEMTRYAREDTHYLLYIYDVMRL
ELQRVAKADHQTDSPLLEVYKRSYDLCTQLYEKELLTENSYLHIYGLQAAGFKAAQLAIV
AGLCEWRDYVARAEDESTGYVLPNKLLLEIAKEMPLSVAKLRRLLKSKHPYIERNVDSVV
SLIKHSIQNCAAFESAAISLKDASPGTVMENIEPLSERKDMYTRTQDVASPNLKENSLQV
QNNTSGLVTVAADASELKDLGTGLFGSAKVPAAVLISKKPSSGLGALLGSSASKKKFRTD
KNVNEEAKLEQIRSSVNLQFQSFTDKSSEEVSTTMPASVSKQHGVTALKDDSEEASEIVG
TSDRVSDAEISCFETENVIPLDDGGGKEVDAEDDPMSLSELSTNFQKCFNSMSKSNNKAQ
KPEFLNIEPFDYEAARKEVTFGEGQKGRQGGKKEGGSKAGGQKKGSAPEQSEFGQGKRRQ
AFPASGNRSATFKS
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacggtaacatggacgtcgaagattctccagaggtttcttccctggaggcctta
gtcgtcgacggttcttctttctcaagaaacctatcgaaactctcttcctcttcccgtctg
atcccgacgagtaaagattttcacttcttctacaacttcgacgacttcaagcgacccacc
gacgatgtatctgcaacctcgcagtcacttctcgagacgatcggtgattccgagcatgtt
ctggggaaatcgattacgttccccggggacatcgaagaagacgacgccgatgattggctc
tgcaacgtcaacgatgagtttctcgagagcttcgatgtttcggttgatgagtttcagagg
gtaaggaaggaggaggaagaaataggtcggactctgttgcctcctgcgtctgattttgag
gaggttgggtttcagatggtttacggtaagaagaagaaacctctagttggtggatctggt
agggatggtggatcagtgattgatgttaaagtggctgagaggagcttatctggtaaggca
aaagttcctttccatgtaccgaccataaagaagcctcaagaagagtttaacattttggtg
aacaacgctaatcaaccgtttgagcatgtttggttggagaggagcgaggacaatcagcgg
gttttgcatccactggagaaactttcagtggttgacttcgttggcaatagtgtaagccag
atggaacctgttaagcccctcccattggaagagactccattcaagctcgttcaagatgtg
aaagatctgaaagatttagtttctaaattgcgtactgttgaagagtttgcggttgatctg
gagcataatcagtaccggtcttttcaaggattgacatgcttaatgcaaatttccaccaga
acggaggattatatagttgatacattcaagcttcgtgttcatattggtccttacctaagg
gagattttcaaagaccctaagaagagaaaggtgatgcacggagcagatcgagatattgtt
tggcttcaaagggacttcgggatatatgtctgcaatctctttgacacaggacaggcttca
agggtgctaaatttggagagaaacagcctggagtttcttttgcagcatttttgtggtgtt
acagcaaataaagaataccaaaatgcagactggaggattcgacctcttccaaaggaaatg
acaagatatgcaagagaagatacccactatcttttgtacatatatgacgtaatgagacta
gaactgcaaagagtggcaaaggctgaccatcaaacagactctcccctgcttgaggtctat
aagcgcagttacgatttgtgcacacaactatatgagaaagagcttttgactgagaattca
taccttcacatatatgggcttcaggcagcgggcttcaaggcagctcagcttgccattgtt
gcgggactttgtgaatggcgtgattacgttgcacgtgcggaggacgagagtactggttat
gttttgccaaacaaacttcttcttgaaatagccaaggagatgcctcttagtgttgccaaa
ttgcgtcggttgttgaagtcaaagcatccttacattgagcgtaatgttgattctgttgtc
agcctcatcaagcattcgatacaaaattgtgcagcatttgagtctgctgctatatcttta
aaagatgcgtctcctggaactgtaatggagaatattgaacctcttagtgagaggaaagac
atgtatactcgtacacaagacgtagcttctccgaatctgaaggaaaattctttgcaagtt
cagaataatacctcgggcctagtcacggttgcagcagatgctagtgaactgaaggattta
gggacaggcttgtttggttctgctaaggttcctgcggctgttctgatctctaagaaacca
agcagtggtttaggagcattactgggaagttcagcctcgaaaaagaaatttcgaacggat
aagaacgtgaatgaagaggcgaagctcgaacagatacgatcatctgtaaacctgcaattc
caatcttttaccgacaaaagttctgaagaggtgtcgactactatgccagcctctgtttcc
aagcaacatggtgtgactgcgttaaaagatgattcagaagaagcctcagaaattgttggt
acttctgatagagtttcagatgccgaaatatcttgttttgagacagagaatgttataccg
ttagacgatggtggtgggaaggaagttgatgcggaagatgatccaatgtccctctcggag
ttgtccacaaactttcagaaatgctttaactccatgagtaagagcaacaataaggcccaa
aagcccgagttcttaaacatagaaccgtttgattatgaagctgcaagaaaagaggtgaca
tttggagaaggacaaaagggaagacaaggaggaaagaaagaaggtgggtcaaaagcagga
ggtcagaagaaggggtctgctccggaacagtctgagtttgggcaaggaaaacgccgtcaa
gcctttccagcatccgggaatagaagtgcaaccttcaagagttag
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