KEGG   Brassica napus (rape): 106384889
Entry
106384889         CDS       T04128                                 
Name
(RefSeq) HBS1-like protein
  KO
K14416  elongation factor 1 alpha-like protein
Organism
bna  Brassica napus (rape)
Pathway
bna03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106384889
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106384889
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     106384889
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP RUBY_RBDX
Other DBs
NCBI-GeneID: 106384889
NCBI-ProteinID: XP_048607845
LinkDB
Position
C3:2347066..2350509
AA seq 628 aa
MPRKGFSNFDDYDDGFDDDYDYDYDDDDEHEEAEQKEVEIAQQGVWRCGICTYDNDESMN
VCDICGAIRHDTVAGGNQTIINNNTASMKQKERQDTSVHNPLKKERDRSETSSQGRHAHI
GGVKSSKSVPKAKADSSHETTSSSKNMEASESLTSTMNKMSLTGEAETSRDIKSRSARSK
SNHKPEEWMLLDKESDILTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAK
LQGKGSFAYAWALDESAEERERGITMTVAVAYFNTKRHHVVLLDSPGHKDFVPNMIAGAT
QADAAILVVDASIGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAVNKMDIVAYSKERFD
LIKQHVGSFLQSCRFKESSLTWIPLSAMENQNLVSAPSESRLSSWYQGPCLLDAVDSVNS
PGRDVSKPLLMPICDVVRSNSHGQVSACGKLEAGAVRSGSKIMVMPSGEQGTVRSLERDS
QGCTIARAGDNVAIALQGIDANQVMAGGVLCHPDYPVSVATHLELMVLVLEGATPILLGS
QLEFHVHHAKEAATVVKLVAMLDPKTGEPTKKSPRCLTAKQSAMLEVSLHYPVCVETFSE
SRALGRVFLRSSGRTVAMGKITRIIQDS
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgcctcgtaaaggattctccaatttcgatgattatgatgatggtttcgacgatgattat
gactatgactatgatgatgatgatgaacatgaagaagctgaacagaaggaagtagaaatt
gctcagcaaggggtttggagatgtggaatctgtacatatgacaatgatgagagtatgaat
gtgtgtgatatttgcggtgctattcgtcatgatacagtggctggcggaaaccaaactatc
attaacaacaatacagcaagcatgaagcagaaagagaggcaagatacgtcagtacataac
cctctaaagaaagaaagagatagatcagaaactagctcccaaggcagacacgctcatatt
ggcggcgtaaaatctagcaaaagtgtgccaaaagcaaaagcagattcgtctcatgagaca
acttcttcctcaaaaaatatggaggcgtcagagagtcttactagtactatgaacaagatg
tctttgactggggaagcagaaacctccagagatattaaaagtagaagcgcaagatcaaaa
tcaaaccataagccagaggagtggatgcttcttgataaagaatcagatatactaactcaa
cttaatctcgccatcgttggacatgttgattcaggcaaatcaacgctttcaggtagacta
ctgcatctactaggaagaatctctcaaaagcaaatgcacaagtttgagaaagaagcaaag
ctgcagggcaaggggtcctttgcatatgcctgggcattggacgagagtgctgaagagagg
gaaagagggatcacaatgacagtggcggttgcttacttcaacaccaaacgacaccatgtt
gttttgctagactctcctggacacaaagactttgttcccaacatgatagcaggagcaacg
caagcagatgcggcgattctcgtcgtggatgcatccatcggtgcttttgaagctggtttt
gataatttgaaaggacagacgagggagcatgcgcgtgttcttagaggctttggcgtggag
caagtcatagtcgcagtcaacaaaatggatattgttgcgtattccaaggagaggtttgat
ttgattaagcagcatgttggatcttttctgcaatcatgtcggtttaaagagtcgtctctg
acgtggattccgttaagtgccatggagaaccaaaatttggtttctgctccctctgaaagc
cgcctatcctcatggtaccaaggtccatgtttattggatgccgttgactctgttaactct
cctggtagagacgtctcaaagcctctgctaatgcctatatgtgacgttgtgagatcaaac
tcacatgggcaggtatctgcatgtggcaaacttgaagctggagctgttcggtcaggatcc
aagataatggttatgccatcgggagagcaaggaactgtgcggtctctggagcgtgattct
cagggttgcaccatagcaagagctggagataacgtagcaatagctttgcaagggatcgat
gcaaatcaagtgatggcaggaggtgtgctgtgccatcctgattatccagtttcagtagca
actcatttggagttgatggtgctcgtcttggaaggtgcaacaccgatcttgctcggttct
cagttggagtttcatgtgcaccatgcaaaggaagcagcaacagttgtgaagcttgtggca
atgcttgatccgaaaacaggggagccgacaaagaagtctcctcgttgtctaactgctaaa
caaagtgcaatgcttgaggtgagtcttcattatccagtttgtgtggagacattttctgaa
agtagagctcttgggagagtgttccttagatcatcaggaagaacagtcgcaatgggcaaa
ataactcggatcatccaagactcttaa

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