Brassica napus (rape): 106384889
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Entry
106384889 CDS
T04128
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106384889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106384889
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106384889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
RUBY_RBDX
Motif
Other DBs
NCBI-GeneID:
106384889
NCBI-ProteinID:
XP_048607845
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Position
C3:2347066..2350509
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AA seq
628 aa
AA seq
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MPRKGFSNFDDYDDGFDDDYDYDYDDDDEHEEAEQKEVEIAQQGVWRCGICTYDNDESMN
VCDICGAIRHDTVAGGNQTIINNNTASMKQKERQDTSVHNPLKKERDRSETSSQGRHAHI
GGVKSSKSVPKAKADSSHETTSSSKNMEASESLTSTMNKMSLTGEAETSRDIKSRSARSK
SNHKPEEWMLLDKESDILTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKFEKEAK
LQGKGSFAYAWALDESAEERERGITMTVAVAYFNTKRHHVVLLDSPGHKDFVPNMIAGAT
QADAAILVVDASIGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAVNKMDIVAYSKERFD
LIKQHVGSFLQSCRFKESSLTWIPLSAMENQNLVSAPSESRLSSWYQGPCLLDAVDSVNS
PGRDVSKPLLMPICDVVRSNSHGQVSACGKLEAGAVRSGSKIMVMPSGEQGTVRSLERDS
QGCTIARAGDNVAIALQGIDANQVMAGGVLCHPDYPVSVATHLELMVLVLEGATPILLGS
QLEFHVHHAKEAATVVKLVAMLDPKTGEPTKKSPRCLTAKQSAMLEVSLHYPVCVETFSE
SRALGRVFLRSSGRTVAMGKITRIIQDS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaaggattctccaatttcgatgattatgatgatggtttcgacgatgattat
gactatgactatgatgatgatgatgaacatgaagaagctgaacagaaggaagtagaaatt
gctcagcaaggggtttggagatgtggaatctgtacatatgacaatgatgagagtatgaat
gtgtgtgatatttgcggtgctattcgtcatgatacagtggctggcggaaaccaaactatc
attaacaacaatacagcaagcatgaagcagaaagagaggcaagatacgtcagtacataac
cctctaaagaaagaaagagatagatcagaaactagctcccaaggcagacacgctcatatt
ggcggcgtaaaatctagcaaaagtgtgccaaaagcaaaagcagattcgtctcatgagaca
acttcttcctcaaaaaatatggaggcgtcagagagtcttactagtactatgaacaagatg
tctttgactggggaagcagaaacctccagagatattaaaagtagaagcgcaagatcaaaa
tcaaaccataagccagaggagtggatgcttcttgataaagaatcagatatactaactcaa
cttaatctcgccatcgttggacatgttgattcaggcaaatcaacgctttcaggtagacta
ctgcatctactaggaagaatctctcaaaagcaaatgcacaagtttgagaaagaagcaaag
ctgcagggcaaggggtcctttgcatatgcctgggcattggacgagagtgctgaagagagg
gaaagagggatcacaatgacagtggcggttgcttacttcaacaccaaacgacaccatgtt
gttttgctagactctcctggacacaaagactttgttcccaacatgatagcaggagcaacg
caagcagatgcggcgattctcgtcgtggatgcatccatcggtgcttttgaagctggtttt
gataatttgaaaggacagacgagggagcatgcgcgtgttcttagaggctttggcgtggag
caagtcatagtcgcagtcaacaaaatggatattgttgcgtattccaaggagaggtttgat
ttgattaagcagcatgttggatcttttctgcaatcatgtcggtttaaagagtcgtctctg
acgtggattccgttaagtgccatggagaaccaaaatttggtttctgctccctctgaaagc
cgcctatcctcatggtaccaaggtccatgtttattggatgccgttgactctgttaactct
cctggtagagacgtctcaaagcctctgctaatgcctatatgtgacgttgtgagatcaaac
tcacatgggcaggtatctgcatgtggcaaacttgaagctggagctgttcggtcaggatcc
aagataatggttatgccatcgggagagcaaggaactgtgcggtctctggagcgtgattct
cagggttgcaccatagcaagagctggagataacgtagcaatagctttgcaagggatcgat
gcaaatcaagtgatggcaggaggtgtgctgtgccatcctgattatccagtttcagtagca
actcatttggagttgatggtgctcgtcttggaaggtgcaacaccgatcttgctcggttct
cagttggagtttcatgtgcaccatgcaaaggaagcagcaacagttgtgaagcttgtggca
atgcttgatccgaaaacaggggagccgacaaagaagtctcctcgttgtctaactgctaaa
caaagtgcaatgcttgaggtgagtcttcattatccagtttgtgtggagacattttctgaa
agtagagctcttgggagagtgttccttagatcatcaggaagaacagtcgcaatgggcaaa
ataactcggatcatccaagactcttaa
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