KEGG   Brassica napus (rape): 106385029
Entry
106385029         CDS       T04128                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
bna  Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:bna00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:bna03009]
    106385029
Ribosome biogenesis [BR:bna03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    106385029
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd Beta-prop_EML NBCH_WD40 Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_IP5PC_F Beta-prop_WDR75_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_LRRK2 Beta-prop_SCAP Beta-prop_Nup120_160 Beta-prop_DCAF12 Beta-prop_SPT8 PEP5_VPS11_N WDR54 VPS8_N Peptidase_S9 PROPPIN LRV_FeS
Other DBs
NCBI-GeneID: 106385029
NCBI-ProteinID: XP_013680426
UniProt: A0A816RL49
LinkDB
Position
C1:complement(22976623..22978783)
AA seq 437 aa
MEISVIACSSIDGGIGSWDIKTGTEQLRFKQCASPAHGLAAVGEKFLAASQLRNASGSSG
SIFFWSWNKPQVEVRSFPVESVKALAANSEGTYIVGGGASGDIFLWEVASGKLLKKWHGH
YRSVTCLVFSGDDSLLVSGSEDGSVRVWSLLRLFDDLQRQQQGSTLYEHDFNEHTTSVTD
IVIDYGGCNAFIVSASGDGTCKVWSLSKGKLLRNIIFPAAINALALDPGGSIFYAASVDS
KIYVGAMNSSSDYATQSLGSVSEQGKAVTCLAYCADGNLLISGSEDGVICVWDPKSRRLV
RTFSHGKGPVNNIQVVRRTVVGNSNKAQSSWKRNGSSLPPPPLEKYERSGDNTVDGIVIV
DPPPLSDVPVYSSYHSADLINEQVRELQQQGSAATEIEMEKLKLEYKKSLQMNDQWQKNY
ENLLQVVMEEELNGSSC
NT seq 1314 nt   +upstreamnt  +downstreamnt
atggagatttctgtcattgcgtgctcgtcaatcgacggcggaatcggaagctgggatatc
aaaaccggaacggaacagctccgattcaagcagtgcgcctctcccgctcacggtctcgcc
gccgtcggagaaaaattcctcgccgcctctcagctccgtaacgcatccggttcctctggc
tcgattttcttctggtcttggaacaagcctcaagttgaagtgaggagcttccccgtggag
tcagtaaaggctcttgcagctaacagtgaaggaacttacatcgttggtggtggagcctct
ggagatatctttctttgggaggttgcgagtgggaagctgcttaagaagtggcatggtcat
taccgttcagttacatgcttggtcttctctggagacgattctttgttggtttccgggtct
gaagatggctctgttcgagtctggtctcttttaaggctgtttgatgatctccagaggcag
cagcaagggagcactctctatgaacacgattttaatgagcatacaacttctgtaaccgac
attgtcattgactatggtggctgcaatgcttttatagtttctgcttcaggagatgggact
tgcaaggtttggagcttgtccaaggggaaattgttgagaaacatcatctttcctgcagcc
atcaatgcacttgcattagaccctggcggctctattttctatgctgctagtgtagatagc
aaaatttacgttggtgccatgaattcctcaagtgactatgcgacacaaagtcttggttct
gtatctgaacaaggcaaagctgttacttgcttagcgtattgcgcagacggaaaccttttg
atttctgggtcagaagatggtgtgatttgcgtttgggatcccaaatcacgtcgccttgtt
cgtacattcagccatggaaaaggacctgtgaacaacattcaagttgtcagaagaacggtt
gttggtaattccaacaaagcacaatcttcatggaaaagaaatgggtcgtcattaccacct
cctcctttggaaaaatacgaaagatcaggagacaatactgtggatggtatagttatcgtc
gacccgccgccactttctgatgttcctgtttactcctcttaccacagtgccgaccttatc
aacgagcaagttagagaacttcagcaacaaggctctgcagcaacggagatcgagatggaa
aaattgaaacttgagtacaagaaatctctacagatgaatgatcaatggcagaagaattat
gagaacttgctccaggtggttatggaggaagagctaaacggtagttcctgttaa

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