Brassica napus (rape): 106385399
Help
Entry
106385399 CDS
T04128
Name
(RefSeq) exopolygalacturonase clone GBGE184
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106385399
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
106385399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106385399
NCBI-ProteinID:
XP_013680776
UniProt:
A0A078JGI6
LinkDB
All DBs
Position
C8:complement(452453..454179)
Genome browser
AA seq
420 aa
AA seq
DB search
MAGARSLVKANHTNVGSLILMALVFGSCVANGEYLSDRRGLVAVAGNPTVFDITKFGAVG
NGATNSFKAFLNAWLQVCASPVPATLLVPKGEFLTGPVIFAGPCKSKVTIEVQGTITATP
SGYATPEWFLFEHVDNVLLTGPGTFHGKGEAVWKADGCGKKVDCNLPPTSLKFRNILNLE
IAGISSVNAKAFHMFLVKTTNVNIHNINIIAPAESPNTDGIHLSNAVNVNIVQSTIGTGD
DCISVGRGSTNVTVEHVTCGPGHGLSVGSLGKYPHEEDVSGIHFKSCTMKGTDNGLRIKS
WGGSSPSKAVDIKFEDITMESVKNPIIIDQNYGSRGGDSKVAISDVLFKNVRGTTITKDE
VQIMCSKSVPCTGVSVIDVNLNFVGDKGGHPSASGGLIGALCTNANVIFGGKLSFPMCPK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggctggcgcaagaagtttggtcaaggcaaatcatactaatgtaggctcattaatttta
atggccttggtgtttggttcttgcgtagctaatggtgagtatctcagtgaccgccgtggt
cttgtcgctgttgccggcaaccctacggtctttgatattactaagtttggagcagtggga
aatggtgccaccaattctttcaaggcgtttttaaatgcatggctccaagtgtgtgccagt
cctgtaccagcaacgctactagtccctaaaggagagttcttgactggtccagtaattttt
gctggtccatgcaaaagcaaagtgaccatcgaagttcaaggcacaatcaccgctacacca
agcggatacgcgacccctgaatggttcttattcgagcatgtcgacaatgtcctcctcacc
ggacccggcacattccacggcaaaggtgaagccgtatggaaagcagatggctgtggcaaa
aaggtcgactgcaatcttcctccaacgtctctaaaattcagaaacatcttaaatcttgaa
attgccggcattagctcggtcaacgcgaaggccttccacatgttcttggtgaaaactaca
aatgtcaacattcacaacatcaacattattgcccctgctgaaagtcccaacaccgatggt
atccatttgagcaatgcggtcaacgttaacatcgttcagagtacaataggaacaggagac
gattgtatctctgtcggtcgtggttccaccaatgtaacagtcgaacacgtgacttgtggc
ccaggacacggactaagtgttggtagtctcggaaagtacccgcacgaggaggatgttagc
ggcattcactttaagagctgcacgatgaaaggtaccgacaacggtctaagaatcaagagt
tggggtggttcgtctccaagcaaggctgtggacattaagtttgaagatattacaatggaa
agcgtcaagaacccaatcatcattgaccaaaactacggctcaagaggcggagattcaaag
gttgcgataagcgatgtgttgttcaagaacgtaagaggaacaacaattactaaagatgaa
gtccagatcatgtgcagcaaatcagtaccatgcacaggagtcagcgtcattgacgtgaac
ttgaacttcgtaggtgataaaggaggacatccttcggcgtcaggaggcttgatcggagct
ctttgcaccaacgccaatgttatcttcggtggaaagcttagcttccctatgtgtcccaaa
taa
DBGET
integrated database retrieval system
