Brassica napus (rape): 106385932
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Entry
106385932 CDS
T04128
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
106385932
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
106385932
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
106385932
NCBI-ProteinID:
XP_013681284
LinkDB
All DBs
AA seq
682 aa
AA seq
DB search
MSPQTSYSYIKFDLEIWKKKMIWQKTIASWMICFLLLLLLPIAFSEPTRNLKGTGARAPT
VQQIRNKEVIVDNGIVRVTFSNPEGLITGIKYNEIGNVLNPYLRARGYWDITWQRDNNIL
PTLDRIEGTNFRIITQNEEQVEISFSRTWNGGSDHIPLNVDKRYIIRTNTSGIYTYGIFE
RQPEWPEVEMGLIRVAFKLNPDRFHYMVVADNRQRQMPTDDDRDIHSGRAKPLAYKEAVE
LTNPRNQMFKNQVDDKYQYSCEVKDNKVHGWISTKSNVGFWLISPSGEYRSGGPVKQELT
SHVGPTTLTTFISQHYVGQDMETRYKTGEAWKKVLGPVFIYLNSDSTGNNLQHSLWEDAK
RQTEQEVEAWPYGFVASSDFPTRQERGTITGRLFVNDWFLAPAGYAYIGLAPPGEAGSWQ
TNTKGYQFWTQTNETGYFTISNVRPGTYNLYGWVHGFIGDFKYQNLVNVAAGSEICLDRV
VFQPPRNGPTLWEIGVPDRTAREYFVPEPYQNTMNPLYLNHTDKFRQYGLWQRYTELYPN
HDLVYTVGVSNYSQDWFYAHVTRNIYGSTYVPTTWQIVFELPYVNWRGSYTLQLALASAA
RANLQVRFNNEYSRPLFSEGIGRDNAIARHGIHGAYHLYSIDVPGRLLRTGTNTIYLRQS
KAVGAFEGLMYDYIRLEEPSTA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacaaacatcttattcttacattaaattcgatcttgagatttggaaaaagaag
atgatttggcagaagacgatagcttcgtggatgatatgtttccttctgttgcttcttctt
ccgatagctttttctgagccgacaagaaacttaaagggaacaggtgcaagagctccaaca
gtgcagcagataagaaacaaagaggtgatagtggacaatggaattgtgagagtgactttc
tcgaatcctgaaggattaataactgggatcaaatacaatgaaatcggcaatgttcttaat
ccatatctccgagctcgagggtactgggacataacatggcaaagagacaacaacattctc
ccaacgttggatagaatcgaaggaaccaactttagaatcataactcaaaacgaagaacaa
gtggagatttctttctcccgaacatggaatggtggttctgatcatattccattaaacgta
gacaagaggtatattatacgtacaaatacttcaggaatctacacttatggaatttttgag
agacaacccgaatggccagaagtggagatgggtctaattcgagtcgcctttaaactcaat
cctgatagattccattacatggtggtggcagataatcggcaaagacaaatgccaacagac
gatgaccgtgacatccacagtggccgtgccaagccccttgcttacaaagaggctgtagaa
ttgactaatcctcgcaaccaaatgttcaaaaaccaggtggatgataaataccagtactca
tgcgaggtcaaggacaacaaggtgcatggttggatatcgaccaagtccaatgttggtttc
tggctcatctcaccgagcggtgaataccgctctggtggaccggtcaaacaggagctcacg
tctcacgtcggtcccacgacccttacgacctttataagccagcattatgttggtcaggac
atggagacaaggtacaaaactggtgaagcgtggaaaaaggtcttgggacctgtattcatt
tacttaaactctgattctaccggcaataatctacaacattcgttatgggaagatgctaaa
cgacagaccgaacaagaggttgaagcatggccgtacggttttgtagcgtcctctgacttt
cctactcgtcaagaaagaggaaccattaccggtcgactctttgtcaacgactggttcttg
gctccggcaggatatgcatacatcggtttagcaccgccaggagaagctggttcatggcaa
acaaatactaagggataccaattttggacacagacgaatgaaaccggctatttcaccatt
tctaacgttagaccgggaacgtataatctatacggatgggttcatggttttatcggagac
ttcaaataccaaaacctagttaacgtagctgcaggttcagagatatgtcttgatagagtt
gtgttccagcctcctaggaatggtccaacgttatgggagattggtgtaccggaccgaacc
gccagagaatactttgtaccggaaccataccagaatacaatgaaccccttatacttaaac
cacactgacaagtttaggcagtatgggttatggcaacgttacacggagttatatccaaac
catgatctcgtctacacagttggagttagtaactatagtcaagactggttctacgctcac
gtcacaaggaacatttatggttcgacctatgtaccaacgacatggcagattgtttttgaa
cttccatatgtgaactggcgaggtagctacacattgcaactagctttagcttcggctgca
cgggctaacttacaagtacggttcaacaacgaatactctaggccattgttctctgagggt
atcggaagagataatgctatagcaagacatggaatccatggagcctaccatctttatagc
attgatgtacctggaaggttactaagaaccgggaccaacacaatctatctacgtcagtct
aaagcggtgggagcgtttgaaggtcttatgtatgattacattcgtcttgaagagccttct
acagcttag
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