Brassica napus (rape): 106386841
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Entry
106386841 CDS
T04128
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106386841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106386841
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106386841
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106386841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
106386841
NCBI-ProteinID:
XP_013682109
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All DBs
Position
C3:complement(6077271..6081254)
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AA seq
610 aa
AA seq
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MSNLHSSLNGSASNLPDGSGRSFAGSYSGQSGAPSPGFHSGNLQGLHNLHGSYNLQGTLS
SRNSSMNSLPSPGVQQPNVSFSTGRFASSNLSVPLSQLSHNSSHGHSGIPNRGGINVGNP
GFSSNANGGAGSIPGILSTSPGLGNRNSVPMGMSQLLGNAGPRITTNSMGNMVGGGNLRN
ISSGGLSMPGLSTSRLNLGANSGSGLGVQGQNRMMGGLPQGSQVMSMLGNSYHTGGGQLS
QNHLQSVNNMMLGDHSNDSSLFDINNDFPQLTSRPGSAGGTQGQLGSLRKQGLGVPLAQQ
NQEFRIQNEDFPALPGYKGGSSDYPMDMHQKEQLHDNAMSMMHSQNFPMARSGGFNLGES
YSSHRPQQQPQHTSSTGGLQGLGLRPLNSPNAVSSNGYDQLIQQYQQQRQNQSQFPVQQM
SSMNQFRDSELKAAQAEADPFCLLGLLEVLNGSNPELTSLALGIDLTTLGLDLNSTGKLY
KTFASPWTNEPAKTEVEFTVPSCYYATPPPPLTRASFKKFSYELLFYTFYSMPKDEAQLY
AADELYERGWFYHKELRLWFFRVGEPLVRTAAYERGTYECLDPNSFKTVRKEHFVVQYEH
MEKRPSLLQH
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccttcattcatctcttaatggttcagcttcaaatttgccagatgggtcaggc
agatcttttgctggttcctattccggacaatctggtgcaccttctcctggttttcattct
ggaaatcttcagggacttcataaccttcatgggagttataaccttcaaggtacactctca
tcaagaaactcgagtatgaatagtctaccatcccccggtgtacaacaacctaatgtgagt
ttttccactggaagatttgcttctagtaacctatccgttcctctctctcagttatctcat
aatagctcacatgggcattcgggaatcccgaatagaggagggatcaatgttggcaaccct
ggttttagtagtaacgctaatggaggtgccggttctattcctgggattctctccacttct
ccaggacttggtaaccggaatagtgttccgatggggatgtcccagctgttgggaaacgca
ggtcctcggataacaacgaattctatggggaacatggttggtggaggtaacttgaggaat
atcagctcaggtggattgtctatgcctggcctttcgacgtcacgacttaatttgggagct
aatagcgggtcagggttaggcgttcagggccagaaccgcatgatgggtggacttcctcaa
ggatcacaggtcatgtctatgctggggaattcctaccatactggcggcggccaactttcg
cagaaccatcttcagtcagttaacaatatgatgctcggtgatcactctaacgacagttca
ctttttgacatcaataatgatttcccccagctgacaagtcgtcctggttctgctggtggc
actcaaggacaactcggttctttgaggaaacaaggtttaggagtcccgcttgcccaacaa
aatcaggagttccgcattcaaaatgaggactttccagccctacctggttataaaggtggt
agttctgattatccaatggacatgcatcagaaagaacaactccatgacaatgctatgtct
atgatgcactctcaaaactttcctatggctagatctggtggtttcaacttgggggaatca
tattcatcacaccgtccacaacaacagccacaacatacttcatctactggtgggctacaa
ggtcttggcttgagacctctaaactcgcccaacgcagtttcaagcaacggttatgaccag
cttattcagcagtatcagcagcagagacagaaccaatcccagttccccgtgcaacaaatg
tcatccatgaaccaatttagagactctgagttgaaagcggcacaagcggaggcagatcct
ttctgcttgcttggcttgctggaggtactaaacgggagcaaccctgagttgacatctctt
gctcttggcatcgacttaacgacgctagggttggatttgaactcaactggaaaactttac
aagacctttgcttccccttggaccaatgaaccggcgaagaccgaggtcgagttcacagta
ccaagttgttactacgccacaccacctcctccgttaactcgagcaagtttcaaaaagttc
tcttatgagttattgttctacacattttacagtatgccaaaagacgaagcacagctatac
gcagcagatgaactttatgaaagaggttggttttaccacaaggaactgagattatggttc
ttcagagttggggagcctttggtaagaacagctgcatatgaaagaggaacatacgagtgc
ctcgatccaaactcgttcaaaacagtcagaaaggaacattttgttgtccagtacgagcac
atggaaaagagaccaagcttgctgcagcattga
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