Brassica napus (rape): 106386864
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Entry
106386864 CDS
T04128
Name
(RefSeq) probable polygalacturonase At3g15720 isoform X1
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106386864
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106386864
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
106386864
NCBI-ProteinID:
XP_013682132
UniProt:
A0ABQ8D4G1
A0A078HPR8
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Position
A6:complement(27815663..27821728)
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AA seq
400 aa
AA seq
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MKSSYHPHIMEIIVRVVFVVTAVNFGFLNGQVYDVLKFGAKGDGTTDDSEAFVEAWKAMC
SSGGSNKTLLIPSDNTFLLQPLVFQGPCNSPSVQVQLEGKIVAPINKAAWSDFKSYEWVS
FNKIIGLTVLGSGTINGRGSSFWEANMPASKRPTQLYFEGCNNLEINGIASLDSPRNHIS
IHNCTQVKITQIKLIAPGDSPNTDGIDISTSTDVEIYDTIVGTGDDCVALNSGSININIT
RMQCGPGHGISVGSLGKDGEESIVENVQVTNCTFNETNNGARIKTWPNGKGYARNIVFMD
ITLTETKNPIIIDQQYIDKGRIDVEESSAVAISNVTFTDFHGTSGQDEIIKIDCSEVTYC
KDIVLDRINITTVDGNKPIVECSNAYGNSTNAYDGCLKTQ
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcatcttatcatcctcacataatggaaatcatagtacgtgttgtgttcgtggtg
acggcagtcaattttggatttttaaatggccaagtctatgatgttcttaaatttggtgct
aagggagatggtactaccgatgattcagaggcgtttgtagaagcatggaaagctatgtgc
agtagtggtgggagtaataaaaccctccttattccttcagataatacatttttactacaa
cctctagtgtttcaaggtccttgtaactctccatctgtacaagttcagttggaaggaaag
attgtcgcccctattaacaaagcagcatggtcagactttaagtcatacgaatgggtcagt
tttaataaaatcatcggtctaacggtccttggttcaggaacaatcaatggacgtggttca
tctttctgggaggccaatatgccagcttctaaacgccctactcaattgtattttgaagga
tgcaataatcttgaaataaatggaatagcctcactcgatagcccgagaaaccatatctca
atccacaattgcacacaagtgaaaattacgcaaataaaacttattgcgcctggtgatagt
cctaacaccgatggaattgatatttcaacatcaactgatgtagaaatatatgacactatc
gttggaactggagatgattgtgtagctttaaacagtggaagtataaatatcaacatcaca
aggatgcaatgtggtcctggacatggaataagtgtgggaagcttaggaaaagatggagaa
gaatctatagttgagaacgtccaagtgaccaactgcactttcaatgagacgaacaatgga
gcgagaattaagacatggccgaatggaaaaggatatgcaaggaatatagttttcatggat
atcacgctcactgaaaccaaaaatccaattataatcgatcaacagtatatagacaaggga
cgtattgacgtagaggaatcatcagcagtggcgattagcaacgtgacattcacggatttt
catggaacgtcaggacaagatgagattataaagatagattgcagcgaagtcacatattgt
aaagatattgttctagatagaattaatattactacggtggatggaaataagccaatagtt
gaatgcagtaacgcatatggaaattcgaccaatgcttatgatggttgcttgaagacacaa
tag
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