Brassica napus (rape): 106387157
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Entry
106387157 CDS
T04128
Name
(RefSeq) E3 ubiquitin-protein ligase listerin-like
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
bna
Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bna03009
]
106387157
04121 Ubiquitin system [BR:
bna04121
]
106387157
Enzymes [BR:
bna01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106387157
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
106387157
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106387157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
zf-rbx1
HEAT_MROH2B_C
FANCL_C
zf-RING-like
ParcG
zf-C3HC4
C1_1
zf-C3HC4_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
106387157
NCBI-ProteinID:
XP_013682421
LinkDB
All DBs
Position
C3:complement(6480976..6488885)
Genome browser
AA seq
1862 aa
AA seq
DB search
MGRPKGDAARSKSRPSSSSLAASLLPSGSAAAAVGFGGYVGSSRFEASLSNEDSAPFLDL
DSEMAQHLQRLSRKDPTTKIKALTSLSELVKQKKGKELLPLIPQWTFEYKKLILDYSRDV
RRATHDVMTNVVTGVGRDLAPHLKSIMGPWWFSQFDLVSEVSQAAKSSLQAAFPAQEKRL
DVLNLCSAEIFAYLEENLRLTPQNLSDKALASDELEEMYQQMMSSSLRALATLLDILLHE
PNKAGSESVNAESKLASKARRVATSSAAKLFSFHKCFLNFLKSESSSIRSATYSLLSSFI
KNVPEVFSEGDVRCLAPALLGVFRETSPICHSAMWEALLLFSRKFPQSWTYLNVHKSVLN
HVWQFLRNGCFGSPQVSYPALILFLEVMPTQSVQADKFFVNFFDNLLAGRSMCDSSSADQ
LSLLRATTECFLWGLRNASRYCDGPSIHDLQVDLIDKVLVKNLWANFFELSKDSTPHIQR
KPSETLSMSGSVNFLQELGRCILDILSGINLLEQNLLSYFLKTVQESFLNMLQQGDTETV
TGSMRKMIDFLLLLERYSGLEGESWPLDQFMGPLLSKAFPWIKSSELIDGLKLLSVSVSI
FGPRKIVPVLVGDIETYTLLSVEEGRDMSPEKFIKVFQEIFIPWCVDGHDSSTAVRAAKQ
DLLLSLLDDECFSQQWSGVISYVFDQQHHGFDKLASMELLLEKARDQITKRSSGLELSQR
IGSKPDHWHHELIESTAISLVRSSPVTTTSATQFLCSVLGGATEDSSISFVSRSSLVLIY
RGILEKLLSFIKQSPLCSVSDTCSSLIVEAVDIEFDLSSSVDVIAITKFAAEVIDGSLFS
LKALDQDATLLSTILSSVFIIDLESRISSLVDSTLNEFKEKQKDRNIVCGFVHAVCSKMN
NQFWKSINYDVRKSSAKILAQSVRSVVQLEDDLQPCQLTLLCASWMPEVLEYLSLDQTDE
EDICGLLLRESDVWPMWISSSSLTSINTHGVPAHVCDLRTSKSRRYVSFIDSLITKMGIH
RFVVGHKDNGLSPQAWLSAEILCTWEWPGGSVQTSFLPALVSFCKSEPAYGSLLNSIFDI
LLNGALVHGEDEIDSSGNMWVELNNQIEDVKEPFLRALVSLIFTLFKEDLWREEEAMAVF
KMVTDKLFIGEEPSKNCLRIIPFIMSIIISPLRKKTKSSFYGEDTVLPLEAFLGGWLERS
LLFPPLVLWQRGEDMQDWFQLVISCYPVSEKAEEDKALKRHVSNEERTLLLDLFRKQKQI
PGASSVVTQLPAVQILLARLIMVAVSYCGNDFNEEDWDFVFSNLRRLIQSAVVVMEEASE
NVNDFISGVSSMEKEIDTLEGLGLIVSISDPSLNNAKNALSAFYLLKLVKDKSVPDEDYL
YSLTNEIWYPVKDRILEGVLRLFFCTGLAEAIAASYSPEAASLVASFRVDHLQFWELVAQ
LVVDSSPRARDRAVRAVEFWGLSKGAISSLYAIMFSSKPIPSLQRAAYIVLSTEPISRLA
IVADGNVSPSDESLSDQDSSNVGLPSEEKLQLRDEISCMVEKLNYELLDTDLTAPDRVQT
FLAWSLLLSHVNSLPSLTQGRERLVQYIERTANPLILDSLFQHIPLEQYMAQSLKKKDGD
IPSELSVVASAATDAITTGSSLSTVKSLWPIETGNMASLAGAIYGLMLRVLPAYVREWFS
EMRDRSASSLIEAFTRTWCSPSLIKNELSQIRKADFNDESFSVSISKSANEVVATYTKDE
TGMDLVIRLPVSYPLKPVDVNCTKSIGISDAKQRKWLMSMLMFLRNQNGALSEAIRIWKR
NSDKEFEGVEDCPICYSVIHTVNHSLPRRACVTCKYKFHKACLDKWFLTSHKKVCPLCQS
PC
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atgggtagacccaagggagatgctgcaaggagcaagtctcgtccttcaagcagcagcttg
gcagcttctctgttgccgtctggctctgcagccgccgccgtaggttttggcggctatgtg
ggcagctctagattcgaagcttctctttcgaacgaagactctgctcccttcttggatttg
gatagtgagatggcccaacacttgcaacgtctctcaagaaaagaccctacaacaaagatt
aaagctcttacttctctgtcagaactggttaagcagaagaaagggaaagaacttttgcca
ttaatcccacaatggacgtttgagtacaagaagttgatactagactacagtagagatgtc
cggcgagctacgcatgacgtcatgactaatgttgtcactggtgtcgggagagatttagca
ccccatcttaagtctataatgggcccctggtggttttcacagtttgatttggtttctgaa
gtttctcaagcagcgaagtcgtctttgcaggcagctttccctgcccaggagaagagatta
gacgtcttgaatttgtgttcagccgagattttcgcttatctggaggaaaatctgagactt
acacctcaaaatttatctgataaagcacttgcttcagatgaattagaagaaatgtaccag
cagatgatgtcttcatctctgagggcgttggctacacttctagatatattgctccacgaa
cccaataaagctggctcagaaagtgtcaatgcggaatcaaaactggcctcaaaggctagg
agagtagcaacctcctcagctgcgaagttgttctctttccacaaatgctttctgaacttt
ctaaaatctgaaagctctagtatccgatcagcgacttattctttgttgagcagcttcatt
aaaaatgttccagaagtctttagtgaaggcgacgttagatgtcttgcaccagccctgctt
ggtgtttttcgagaaactagtccaatttgccactcagcaatgtgggaggctctcttgctg
ttctccagaaaatttcctcagagttggacctacttaaatgttcataagtctgttctgaat
cacgtatggcagtttcttaggaacggatgctttggatccccacaggtttcttaccctgca
ttgatattgttccttgaagttatgccaacccaatctgtgcaagctgataagttctttgtg
aattttttcgataacttactagctgggaggagtatgtgtgattcttcaagcgcagatcag
ttatcacttctccgtgcaaccactgaatgtttcctctggggattacgtaatgcttcaagg
tattgcgatggtcccagcattcacgatctccaagttgatctaattgataaagtccttgtg
aagaatctatgggcaaacttctttgaactatctaaggacagtactccacatattcagagg
aagccatctgaaactctaagcatgagtggttcagttaattttctgcaagagctaggaaga
tgcatcttagatattctttcaggaatcaatttactcgaacagaacctgctgtcttatttc
cttaaaactgttcaggagagcttcttgaatatgcttcagcagggagatacagagacagtt
accggcagcatgagaaaaatgattgattttctcttgttattggagagatactcaggtctg
gaaggtgagagttggcctttggatcaatttatggggccactgctgtccaaggcttttcca
tggataaaatcatctgaattgatagatggtttgaagcttttgtcagtttcagtatcaata
tttggaccgagaaaaatagttccggtacttgtaggtgatatagagacttatacccttctc
tctgttgaagaagggagggatatgagcccagaaaagtttattaaagttttccaagaaatc
tttattccttggtgcgtggatggacatgactcttcgactgcagttagagctgctaaacaa
gatctcctgctttcattacttgatgatgaatgtttctctcagcagtggagtggtgtaatt
tcttatgtatttgatcaacaacatcacgggttcgataagctggcttctatggaattgctt
ttagagaaggcaagggatcaaattacaaaaagaagttctgggctggagttgagtcaaaga
ataggctctaagccagaccattggcatcatgagctcatagaatcgactgctataagtctt
gtacgttcctccccggtgactacaacctctgctactcagttcttgtgttcagttctgggt
ggtgcaacggaagacagcagtatttcttttgtgtcaagaagctcattggtcttgatatat
agagggatcctcgaaaagctgctatcttttatcaaacagtcaccattatgttcagttagt
gatacatgttcctctcttatcgttgaggctgttgatatagagtttgatttgagcagttcc
gtcgatgtgatcgccataactaagtttgcagcagaagttattgatggtagtttgttcagt
ttaaaggctctggatcaggatgccactctactttcaactattttgtcttctgtctttatc
attgacttggagagtagaatatcatcactagtggacagtactctgaatgagtttaaagag
aagcaaaaggatcggaatatagtgtgtggttttgttcatgctgtttgctctaagatgaat
aatcagttctggaaatctataaactatgatgtcagaaagagttcagcaaagattttggct
cagtccgtaaggtcagttgtccaacttgaggatgatctgcaaccttgtcaacttacatta
ctatgtgcttcatggatgcctgaggtgttggaatatctttcattggatcaaactgatgaa
gaagatatctgtggactgctcctgcgtgagagtgatgtatggcctatgtggatcagctcc
agctcgctaactagcattaatacgcatggtgttcctgctcacgtgtgcgatttgaggaca
tccaagagtcgaagatatgtttctttcattgacagcctgatcacgaaaatggggattcac
cgatttgttgttggccacaaagataatggattatcccctcaagcttggctttccgcagaa
atactctgcacgtgggagtggccagggggtagtgttcaaacgtctttcctgccagcactt
gtctcattttgtaagagtgaaccagcttatgggagtttattaaactccatttttgacatt
ctactcaatggtgctcttgtgcatggagaggatgagatagacagctccgggaacatgtgg
gttgaattgaataaccagatagaggacgtcaaggaaccgtttttgagggctctggtgtca
ttgattttcactcttttcaaggaggacctttggagagaagaagaagccatggctgttttc
aaaatggtcacagataaactcttcatcggggaagagccgagcaaaaactgtttgagaatc
attcctttcattatgagcataataatttcaccactacgtaaaaagaccaaatctagtttt
tacggtgaagatactgtgctgccactggaagctttccttggaggttggctggagaggtct
ttgttgtttcctcctctagtcctctggcaacgtggggaagatatgcaggattggtttcag
cttgttatatcttgttatcccgtaagcgaaaaggctgaagaagataaggcactaaagagg
catgtgagcaatgaagagagaacactcctgcttgacttgtttcgcaaacaaaagcaaatt
cctggtgcatcaagcgtagttacccaacttccagctgtccaaattctgctggcaagacta
ataatggttgcagttagctactgtggaaacgattttaatgaggaagattgggattttgtc
ttttctaatttgaggcgactgatacagtctgcagtagttgtgatggaggaagcttctgag
aacgtcaatgacttcattagtggtgtttcttccatggagaaggagattgatactcttgag
ggacttgggcttattgtttctatatcggatccttctttaaacaatgctaagaatgctctc
tcagcattttacttgcttaaattagtaaaagataaatcggttccagatgaagactatttg
tattccttgacaaatgaaatatggtacccagttaaagatcggatacttgaaggtgttctc
cgtcttttcttctgcaccggtcttgctgaggctatcgctgcttcatattccccagaggca
gcatctcttgttgcttcctttcgagttgatcatttgcagttctgggagttggtggctcag
cttgtagtcgactcttctccacgtgcaagagatagagctgtcagagcagtggaattttgg
ggtctaagcaagggagccataagctctttgtatgcaataatgttctcctccaaaccaatc
ccttcgctgcaacgtgctgcatacattgttttgtctaccgaacctatatccaggctggcc
atagttgctgatgggaatgtgtcacccagtgatgagtctctcagtgaccaggactccagc
aacgttggcttgccatctgaagaaaagctgcagctaagagatgaaatatcttgtatggtt
gagaagttaaattatgaactccttgatacagatttaactgcaccagacagggtgcaaaca
ttcctggcatggtctttgttgctctcgcatgttaactctttaccttcactaacccaagga
cgagagagactggtgcagtatatcgaaagaactgcaaatcctttgatattagatagtctc
ttccagcatattcctttagaacaatacatggcacagagcttgaagaaaaaagatggagat
attccatctgaattatctgtggtagcatctgcagcaactgatgcgattacaactggttcg
tccctgtcaacagtaaagtcactttggcctattgaaaccggaaacatggcctcgcttgct
ggggcgatatatggtctgatgctacgtgttcttccggcttacgttagagaatggtttagc
gaaatgcgtgatcgatctgcatcatctttgattgaagcatttacaagaacgtggtgcagc
ccttctttaatcaaaaacgaactgtctcagataaggaaggcagactttaatgatgagagc
ttttcagtaagcataagcaaatcggcaaatgaagtagttgctacatatacaaaggatgaa
acggggatggatctcgtgatccgtcttccagtttcttacccactgaagcctgttgatgtc
aactgcacaaaaagtatcggaataagcgacgcgaagcagaggaagtggttgatgtctatg
ctaatgtttcttcgtaaccagaacggggctctgtcggaggcgataagaatatggaagagg
aactcggacaaggaatttgaaggagtagaggactgtccgatatgttacagtgtgatccac
acagtgaatcacagccttccaaggcgggcttgcgtgacatgcaaatacaagtttcacaaa
gcatgtttagacaagtggttcctcacatctcataagaaagtctgccccttgtgtcaatct
ccttgctaa
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