Brassica napus (rape): 106387632
Help
Entry
106387632 CDS
T04128
Name
(RefSeq) cleavage stimulation factor subunit 77-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
bna
Brassica napus (rape)
Pathway
bna03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106387632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106387632
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106387632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
Iml2-TPR_39
HAT_Syf1_M
TPR_8
TPR_2
TPR_CcmH_CycH
ANAPC16
TPR_12
TPR_16
A-2_8-polyST
Motif
Other DBs
NCBI-GeneID:
106387632
NCBI-ProteinID:
XP_013682986
LinkDB
All DBs
Position
C8:complement(28841568..28847364)
Genome browser
AA seq
736 aa
AA seq
DB search
MADKYNVEEAEALAKRALHLPITQATPIYEQLLSLYPTSARFWKQYVETQMAVNNDDATK
QIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFTLNYIGTDIASGPIWT
EYITFLKSLPALNPHEDMQRKIALRKVYQRAILTPTHHVEQLWKEYENFENSVNRQLAKG
LVNDYQPKFNSARAVYRERKKYIEDIDWNMLAVPPTGSSKEEVQWVAWKKFLTFEKGNPQ
RIDTALSTKRIIYVYEQCLMCLYHYPDVWYDYAEWHIKSGSTDAAIKVFQRALKAIPDSE
MLKYAYAELEEARGAIQSAKNLYESILGVSTNSLAQIQFLRFLRRAEGVESARKYFLEAR
KSPSCTYHVYIAFATMAFCLDKDPKAAHNIFEEGLKRYMTEPVYILEYADFLTRLNDDRN
IRALFERALSTLPTEESAEVWNRFVQFEQTYGDLASILKVEQRRKEALFGKGEEGSPALD
SSLQDVVSRYSYMDLWPCTSNELDHLSRQELLVKNMNKKVEKTNQPHGSATIGSVASSSK
VVYPDTAQMVVYDPAKKSGIEFSSSVKPVAASASNIFQSNVTATATHVSANTFDEIPKTT
PPALLAFLANLPHVDGPTPNVDVVLSICLQSDLPTGQTAKQSFTAKGNVPSQNDPSGPNR
GGSQRLPRDRRATKRKGSDRQEDDDTASIQSQPLPTDVFRLRQMRKARGISTSSQTPTGS
ASYGSAYSGELSGSTG
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagtacaacgtcgaggaagcagaggctttagccaagagagccttgcactta
ccaattacacaggcgacgccgatctacgagcagcttttgtcactgtatcctacttctgcg
aggttttggaagcagtatgtggaaacacaaatggctgtgaacaatgatgacgctaccaaa
cagatatttagtcgttgcttgttgacctgtcttcaagttcccctttggcaatgttacatt
cggttcatcagaaaggtctatgataagaagggagcagagggtcaagaggagaccacaaag
gctttcgagtttacgcttaattatattgggacagacatagcatctgggcctatatggacc
gagtacattacctttctaaaatctcttccggctcttaacccccacgaagatatgcaacgg
aagattgctctcagaaaagtttatcagagagctatattaactcctactcaccacgttgag
caactttggaaagaatatgagaactttgagaattctgttaaccggcagttggccaaggga
cttgtaaatgactatcaaccaaagtttaacagtgccagagctgtctatagggagcgcaag
aagtacattgaagacattgattggaacatgcttgctgtaccaccaacaggatcttccaag
gaagaagtgcaatgggtggcctggaagaagtttttaacctttgagaaaggaaaccctcaa
aggattgacacggccttgtcaactaagcggattatatatgtttatgaacagtgtctgatg
tgtttataccactatcccgatgtgtggtatgactatgctgagtggcacataaaatctggt
tccacagatgctgcaatcaaagtatttcagcgagctcttaaagccattcctgattcggaa
atgttgaaatatgcttatgctgagttggaggaagctcgtggagctattcagtcagcaaag
aatttatatgaaagcattttgggggttagcacaaactctttggcacaaatacaattcctt
cgttttctcaggagggcagagggtgttgaatctgctcgcaagtactttctagaagctaga
aaatctcctagctgtacatatcatgtgtatattgcttttgctacaatggccttttgtctt
gacaaggatccaaaggctgctcataatatcttcgaggagggattgaaacgctatatgact
gaacccgtttacatccttgagtatgcagatttcttgactagactgaatgatgatagaaat
atcagagctctatttgaacgggctttaagcacactacccactgaagaatctgctgaggtc
tggaatagattcgttcagtttgaacaaacatatggagatcttgctagtattctaaaggtt
gagcagaggaggaaagaagcactatttggaaaaggggaagagggatctcctgctctagat
agttcacttcaagatgttgtttctcggtacagttacatggatctttggccatgcacttcg
aatgagcttgatcatttatccagacaagagttgcttgtgaaaaatatgaataagaaagta
gagaagacaaaccaacctcatggatctgcaactataggtagtgtagcttcttcgtcaaag
gttgtttatccagatacagctcagatggtcgtctatgacccagcaaagaaatcaggaatt
gagttttctagttctgtaaaaccagtggcggcttctgcttcgaacatctttcaaagtaat
gtgacagcaactgcaactcatgtctcagccaacacatttgatgaaataccaaagactact
ccacctgcattgttagcttttttagctaacttgcctcatgttgacggcccaacacccaat
gtggatgttgttctctcaatatgtttgcagagtgacttaccaacaggtcaaactgccaag
cagagttttactgctaaaggcaacgttccaagtcaaaatgatccctcaggtccaaaccga
ggtggatctcagagattgccaagagacagaagagctacaaagagaaaaggttcagatagg
caagaagacgatgatactgcctccatacaaagccagcctctacctacagatgtattcaga
ctaaggcaaatgcgtaaggctcgggggatctcaacatcatcacaaacaccaactggttcc
gcatcgtatggtagtgcctactccggtgagctatctggtagcaccggataa
DBGET
integrated database retrieval system
