Brassica napus (rape): 106387982
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Entry
106387982 CDS
T04128
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bna
Brassica napus (rape)
Pathway
bna03440
Homologous recombination
bna03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106387982
03450 Non-homologous end-joining
106387982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bna03032
]
106387982
03400 DNA repair and recombination proteins [BR:
bna03400
]
106387982
DNA replication proteins [BR:
bna03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
106387982
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
106387982
BRCA1-C complex
106387982
NHEJ (non-homologous end-joining)
MRX complex
106387982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SbcC_Walker_B
AAA_21
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
AAA_13
Motif
Other DBs
NCBI-GeneID:
106387982
NCBI-ProteinID:
XP_013683390
LinkDB
All DBs
Position
C3:10096505..10107694
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGSNGAGKTTIIECLKVSCTGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQERTESSKA
QMSELESSIQKVDAEVHNKEMMLKDLRKLQDQVSRKTAERSTLFKEQQRQYAALPEENED
TMEELKEWKSKFEERIALLETKIRKMERELDDTATTISSLHNAKTNYMLEISKLQTEAEA
HMLLKNERDASIQNIFSNHNLGNVPSTPFSTDVVLNLTNRIKSRLGEFEMDLLDKKKSNE
TALSTAWDCYMDASDRWKSIEAQKRAKDDIKTGISKRIEEKEIERDSFEFEISNVDVKQI
DERENLVQVELERKSKQNSESGFESKIEQKQHEIYSMEHKIKTLNRERDVMAGDAEDRVK
LSLKKTELENLKKKHKKIIDESKDKIRGVLKGRLPLEKDMKKEIVQALRSVEREYDDLSL
KSREAEKEVNMLQMKIQEVNNSLSKHHKDTESRKRYIESKLQALKQESFTIDAYPRLLDS
AKDKRDYHKSKYNMATGLRQMFEPFEQVAREHHFCPCCERTFSAEEEDNFVKKQRAKAST
TGDHVKALAAESSNADSIFQQLDKLRSVFEEYTKLTDEIIPLAEKSLQEFTEELEQKSEA
LDDVLAISAQIKSEKESVEALVQPLENADRLFQEIVSNQKQIEDLEYKLDFRGHGVKTMQ
EIQSELSSLQSTKDKLHDELEKLRDEQIYMERDISCLQARWHALREEKAKAANLLRDVTK
TEEDLERLAEEKSQLDLDVKHLTEAVGPLAKEKEQLLSVYNDIKVKRNQEYEELAEKKRN
YQQEVEALLKANSKINEYNDLKKGERLNDIQEKQRAAESQLQSSESRRNEIVAELSKSKD
LMRNQDQLRRNIEDNLNYRTTKAAVEVLTREIESLEEQILNFGGIPAVEAEIVKILRERE
RLLSELNRCRGTVSVYQSSISKNKVELKQTQYKDIDKRHFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALL
RIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRIAKDDMQHSIIETQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgataagatgctgatcaagggcatcagaagcttcgacccagaaaataag
aacgtcatcactttcttcaggcctttaaccctaatcgtcggttccaacggcgccggaaaa
actacgattatagagtgcttgaaggtatcttgtactggagagttgcctcctaacgcgagg
tctggccacagcttcattcatgaccctaaggttgctggggaaacggagactaaggcacaa
attaagctgcggtttaagacagctgcagggaaggatgtggtatgtataaggtcatttcag
ttgacgcagaaggcttcgaagatggagtacaaggcaattgagagtgtgcttcaaaccatt
aatcctcacactggagagaaagtatgtctcagctacagatgcgctgacatggatagggag
ataccagctttgatgggtgtgtcaaaagctattttagaaaacgtcatatttgtgcatcaa
gatgagtctaattggccactgcaagatccttctactttgaaaaagaagtttgatgatatt
ttctcagccaccagatacacgaaggcgttggaggttattaagaaacttcacaaagatcaa
gctcaggagataaaaacgtataagttgaagttggaaaatctgcagacgttgaaagatgca
gcttataagcttcgtgagagcattgctcaagatcaagaaagaacagagtcttcaaaagct
cagatgtcggaactggaaagcagcattcagaaagtggatgctgaagttcataataaggaa
atgatgttaaaagatctgagaaagctacaggaccaagtttcaagaaaaactgccgagaga
agcaccttatttaaggaacagcagagacagtatgcagcattacccgaggaaaatgaagat
actatggaagaactgaaagaatggaaaagcaagtttgaagaaagaattgctcttttggag
accaaaattcgaaagatggagagagagctggatgacacagcaactacaatttcttctctt
cacaatgcaaaaaccaactatatgctggagatcagcaagctacaaacagaagctgaagct
catatgctgctgaagaatgaaagagatgcttccatccagaatattttttccaatcacaat
ttgggaaatgttccgagtacccctttcagtactgatgtagttttgaatctcacaaatcga
ataaaatcaagactgggtgaatttgagatggacttgctggataagaagaaatcaaatgag
actgctctaagtacggcttgggattgctatatggatgctagtgaccgttggaaaagcatc
gaagctcagaaacgagctaaagatgatatcaagacaggcatatcaaaacgcatagaagag
aaagaaattgaacgcgattcatttgaattcgagatatccaatgtggatgttaaacaaatt
gatgaacgagaaaacctagtgcaagttgagcttgagagaaagtccaaacaaaactctgaa
agcggatttgaatccaaaatagaacagaaacagcatgaaatatacagcatggagcataaa
atcaagactctcaatcgagagagagacgttatggctggtgatgctgaggatagagtgaaa
ttgtctttgaagaagacggagctggagaacctcaagaagaaacacaaaaagataatcgat
gagtccaaggataaaattcgaggggtgctgaaggggagattgccacttgagaaggatatg
aagaaggaaatagttcaagctctgaggtcagttgaaagggaatatgatgacctgagctta
aaatcccgagaagcagaaaaggaggtgaacatgttgcagatgaagattcaagaagtaaac
aatagcttatccaagcatcacaaggatacagaatcaagaaagagatacattgagtccaag
cttcaagccttaaaacaggaatcatttaccattgatgcttatcccagattgttggattcg
gcgaaggacaaacgggactaccacaaaagcaaatacaacatggcaactggtttgcgccag
atgtttgagccatttgagcaggtagcccgtgaacatcatttttgtccttgctgcgagcgc
actttttcagcagaagaagaggataacttcgttaaaaagcaaagggctaaggcttcaacc
acgggggatcatgtcaaagcattagcagcagaatcttcaaacgctgactctatctttcag
cagctggataaacttcgctcagtttttgaagagtatacgaaactaactgatgaaatcatt
cctctcgctgagaaatctttgcaagaatttacagaagagctggagcagaagtctgaagcc
cttgatgatgtattggcaatctcagcgcagataaaatctgagaaggaatcagttgaagca
ctggtgcagcccctggaaaatgctgataggcttttccaggaaattgtatccaaccagaag
caaattgaagatctcgaatataaacttgatttcaggggtcatggtgttaaaactatgcaa
gaaatccaatcagaattaagtagcctccaaagcaccaaggataaattgcacgatgagctg
gagaaattaagggatgaacagatttacatggaacgggatatatcatgcctccaggccaga
tggcatgcactaagagaggagaaggctaaggctgccaatttgttacgcgacgttacaaag
acagaagaagacctagagcgtttagccgaggagaaaagtcaacttgacctagacgttaag
catttgaccgaagctgtgggccctttagccaaggaaaaggagcagttactgagtgtttac
aatgatatcaaagttaaacgtaatcaagagtatgaagaacttgctgagaaaaagagaaac
taccaacaagaagttgaggcattgctcaaggccaattctaagattaatgagtataatgat
ctgaagaaaggagagcggttaaatgatattcaagaaaagcagcgggcagctgaatcccag
cttcagagctctgaatctagaaggaatgaaattgtagctgaactgagcaaaagtaaagac
ttgatgcggaatcaagatcaactgagacgaaatatagaggataacttgaactaccgtaca
acaaaagcagcagtggaggtgcttacgcgtgagattgaatcactggaagagcaaatcttg
aattttggtgggatacccgcagttgaagctgaaattgtaaagatattgcgggaaagagaa
agacttctttcagagttgaatcggtgtcgtggaacagtgtctgtttatcagagcagtatt
tcaaagaacaaagtggagctaaaacagacacaatacaaggacatagataagcggcacttt
gatcaactgatccagctaaagacaactgaaatggcaaataaggacttggatagatactac
aatgcccttgacaaagcactaatgcgatttcacactatgaaaatggaggaaataaataag
attataagggagctgtggcagcagacatacagaggtcaagatatcgattacataagaata
cactcagattcagagggtgcaggcacgcgctcttatagctacaaggttcttatgcagact
ggtgatacagaacttgaaatgagaggaagatgcagtgctggtcaaaaggttcttgcttca
ttgataataaggttggctttagccgagacattttgcctaaactgtggaatattagcactt
gatgagccaactacaaacttggacggtccgaattcagaatctcttgctggagctcttctt
aggatcatggaagacagaaagggccaagagaatttccaactcatagtcattacccacgac
gaacgctttgctcaaatgattggccaacggcaacatgctgaaaaatattaccggatcgcc
aaagatgatatgcaacacagcataattgagacccaagagatctttgattga
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integrated database retrieval system
