Brassica napus (rape): 106388660
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Entry
106388660 CDS
T04128
Name
(RefSeq) probable pectate lyase 7
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106388660
Enzymes [BR:
bna01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
106388660
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
106388660
NCBI-ProteinID:
XP_048605990
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Position
C3:22965416..22968149
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AA seq
471 aa
AA seq
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METARLFKLVCVICIASLIPTLRANVAETDDYWVKMANEARKRTLMAYHPDPYQIVDHFH
ERHYDNSTDVEETEEHASEEEDDIEMSSSPTNSTRRSLRGRGKGKGRGKWSKLKGPCTAS
NPIDKCWRCQPDWARRRKKLVKCVRGFGYRTTGGKRGRIYVVTSNRDDDTVNPRPGTLRH
AVIQNEPLWIIFKHDMSIRLSQELMINSHKTIDARGTNVHIAYGAGITMQYVRNIIIHGL
HVHHIVPGSGGMIRNSNDHFGFRGQADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGS
TGITISNSHFTHHNDVMLLGAQNDNHADKKMQVTVAFNHFGKGLVQRMPRIRWGFVHVVN
NDYTHWELYAIGGSQSPTILSHGNRFIAPPHIQHYREVTKRDYAPESEWKNWNWRSDKDI
FMNNAYFRQSGNPKFMCSHSRQQMIKPKHGSAVSKLTKYAGALDCRVGKPC
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggagacagctaggcttttcaaattagtgtgtgtgatttgtattgccagtttgattccg
accttaagagccaatgttgcggagaccgatgattattgggtaaaaatggctaatgaagct
cgtaaacgtacccttatggcttatcatcccgatccttatcagattgtcgaccacttccac
gaacgtcactacgacaactctactgatgttgaggagacggaggaacacgcatccgaggaa
gaggacgacattgagatgagttctagtccgacgaacagcacaagacggagcctaagaggt
agaggtaaaggtaaaggtagagggaaatggagcaagctaaagggaccttgcactgcaagt
aaccctattgataaatgttggcgttgccagcccgattgggccaggcgtcgcaagaagctc
gtcaaatgtgttcgtggcttcgggtacaggaccacaggaggcaaacgcggtcgaatctac
gtggtcactagcaacagagacgatgatacggtgaaccctagacccggaacactgcgtcac
gctgtgattcagaacgaacctctctggatcattttcaagcacgatatgagcattaggttg
agccaagagctaatgattaatagtcacaagacgatcgatgctcgtggcactaacgtgcac
atcgcatatggtgctgggatcacgatgcagtacgtgcgaaacatcatcatccatgggctt
cacgtccatcacatcgtcccgggcagtggtggcatgataagaaactctaatgaccacttt
gggtttagaggacaggccgatggagatggtatctctatctttggagcaacaaacatttgg
cttgaccacatttctatgtctaaatgccaagatggtctcatcgacgctataatgggctcc
accgggatcactatctctaactctcatttcacccaccacaacgatgtgatgttgcttggt
gcacaaaatgataaccacgcggacaagaagatgcaagtcactgtggctttcaaccacttt
ggtaaaggacttgtgcagaggatgccgaggattcggtggggtttcgtccatgttgtcaac
aatgactatactcactgggagctttatgctatcggcggtagccaaagtcctaccattctc
agccacggaaaccgtttcatcgctcctcctcacatacaacattacagagaggtgacaaag
agggattatgctccagaatcggagtggaaaaactggaattggagatccgacaaagacatt
ttcatgaacaacgcatatttcagacaatctggaaatccaaaattcatgtgttcacactcc
agacaacagatgataaagcccaaacacggttcggccgtttcaaagcttaccaaatacgcc
ggagcattggattgccgggtcggaaaaccatgctaa
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