Brassica napus (rape): 106388761
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Entry
106388761 CDS
T04128
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 13 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
bna
Brassica napus (rape)
Pathway
bna04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
106388761
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bna04040
]
106388761
Ion channels [BR:
bna04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
106388761
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
106388761
NCBI-ProteinID:
XP_013684355
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Position
C3:complement(22522037..22526666)
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AA seq
704 aa
AA seq
DB search
MGFGRDNRVRWFKEPSSTEYGYGRRARPSLNAVLNNVRRGFEKGSDKIRTFKKPLSFNSH
KNEEKRNATGTQKKNIINPQGSFLQNWNKTFLFASVIALAIDPLFFYIPIVDGKKHCLNL
HSSLEIAASVLRTFVDAFYIIHIVFQFRTAYVSPLSRVFGRGELVEDPKAIALKYLSSYF
IIDVLSILPLPQLVVLAVIPNVEKPVSLLTKDYLITVIFAQYIPRILRIYPLYSEVTRTS
GIVTETAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWREACEKRQGCELRFLYCDG
NNNVINDYLTTSCPFINPDDITNSTTFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRN
LSALGQNLNTSKFVGEIIFAVLICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAE
QWMAHRMLPEDLRKRIRRYEQYKWQETRGVEEENLLRNLPNDLRRDIKRHFCLDLLKKVP
LFEIMDEQLLDAVCDKLRPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFN
AVYLNASDFCGEDLLTWALDPQSSSHFPISPRTVQALTEVEAFALAAEDLKLVASQFRRL
HSKQLQHTFRFYSVQWRTWGASFIQAAWRRHCRRRLARSLTQEEDQFRIAVAKRERRAAS
SSSLVATLYASRFASNALRNLRQHNTLPLLPPKPSEPDFGVDDD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgggttttggccgtgacaatcgtgtaaggtggttcaaagaaccatcatccacagagtat
ggttacggaagaagagctagaccatctctaaacgcagtgttgaataatgtccgaagaggg
tttgagaaaggatcagacaagatcaggactttcaagaaacccttaagtttcaattcacat
aagaacgaagagaagagaaacgctactggtacacagaagaagaacatcataaacccacaa
ggctcctttctacagaactggaacaaaaccttcctcttcgcttctgtgatcgctctcgcc
attgatcccttgtttttctacattcccattgttgatggaaaaaagcattgcctcaacttg
cactctagcctcgagatagcagctagcgtgcttcgaacgtttgtagatgccttctacatt
attcacattgtgtttcagtttaggacagcttatgtctctcctttgtcccgggttttcggt
agaggcgagttggttgaagatcctaaagccattgctttaaagtatctctcctcttatttc
atcatcgatgttctctctatccttccactcccacagcttgtagtcttggctgttatcccg
aatgtggaaaaacctgtctctttgctcactaaggactacctgataactgtcatatttgct
cagtacattccaaggattcttcgtatttacccgctttacagtgaagttacaagaacatct
ggcatagttactgaaacagcttgggctggagctgcttggaacctctctctctacatgtta
gccagtcatgtgtttggagctttgtggtacttaatatcagttgaacgagaagacagatgc
tggcgtgaagcttgtgagaagagacaagggtgtgagttgaggtttctctactgcgatgga
aacaacaatgttataaatgattacctgactacttcgtgtccgtttatcaaccctgatgat
ataacgaattcaactactttcaactttggtatcttcactgatgctctcaagagtgggatt
gttgaatcagatgatttctggaagaagttcttctactgcttctggtggggtctgcgtaat
ctaagtgcactgggacaaaacctcaacacaagcaagttcgttggagaaattatctttgct
gtattaatttgcatatctggactagttctattcgcactacttatcggcaatatgcagaaa
tacttggagtcgacaacagttagggaagaggagatgagagtgagaaaaagagatgcagag
caatggatggctcatcggatgttaccagaggacctaaggaaacgtatcagaaggtatgaa
caatacaaatggcaagaaaccagaggagttgaagaagaaaaccttctgcgtaacctccct
aatgacctcagaagagacattaaacgccatttctgcctcgatcttctcaagaaagtacct
ctgttcgagataatggatgagcagctcctagatgccgtgtgtgacaagctaagaccagtg
ctctacactgagaatagctacgcgattagggaaggagacccagtggaggagatgttgttt
gttatgagaggtaagcttatgagcgccaccacgaacggtggccggacgggattcttcaac
gccgtgtacctcaatgctagcgacttttgcggcgaggatcttctcacgtgggcgttggat
cctcagtcttcgtctcattttccaatctcgccgagaacagttcaagctctgactgaagta
gaagcctttgctcttgcagcagaagatctcaagcttgtcgcctcgcagttcagacggcta
catagcaaacagcttcaacatactttcaggttttattcggtacaatggaggacatgggga
gcgtcgtttatacaagcggcgtggcggagacattgtcggagaagattggctaggtcatta
acgcaggaagaagatcaattccgaatcgcggttgcaaaacgcgaacgcagagccgcgtcg
tcgtcgagccttgttgcgacgttatacgcgtcgcggttcgcgtcaaacgcgcttcgcaat
ctgcgtcagcacaatacactgcctttgcttcctccgaagccatcagagcctgatttcggt
gttgatgatgattga
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