Brassica napus (rape): 106388968
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Entry
106388968 CDS
T04128
Name
(RefSeq) cell division control protein 48 homolog A
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
bna
Brassica napus (rape)
Pathway
bna04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
106388968
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106388968
03009 Ribosome biogenesis [BR:
bna03009
]
106388968
04131 Membrane trafficking [BR:
bna04131
]
106388968
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bna04147
]
106388968
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
106388968
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
106388968
Membrane trafficking [BR:
bna04131
]
SNARE
SNARE associated proteins
Others
106388968
Autophagy
Aggrephagy
Other aggrephagy associated proteins
106388968
Exosome [BR:
bna04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
106388968
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_14
AAA_33
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
ATPase_2
Parvo_NS1
AAA_18
IstB_IS21
Vps4_C
ABC_tran
Viral_helicase1
AAA_7
AAA_lid_PRS2_C
NB-ARC
TsaE
NACHT
DUF815
AAA_24
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
106388968
NCBI-ProteinID:
XP_013684600
LinkDB
All DBs
Position
C3:complement(24942012..24945593)
Genome browser
AA seq
809 aa
AA seq
DB search
MSNPAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDT
ILIKGKKRKDTVCIALADESCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHI
LPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVELKVIETDPAEYCVV
APDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWD
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGGGGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNI
FKACLRKSPVAKDVDINALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEREKRRSLN
PEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFET
NAGSGATTGVADPFATSAAAAADDDDLYN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacccagctgaatcttccgactcgaaatcgaagaaagatttcagcactgctatt
ctcgagaggaagaagtctcctaacagacttgtcgtcgatgaggccatcaacgatgataac
tccgtcgtctctctccaccccgccaccatggagaagctccagctcttccgcggcgatacc
attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgaatca
tgtgaggagccaaagattaggatgaacaaagtggttagatctaacttgagggttagactt
ggagatgtcatctctgttcaccagtgccctgatgtcaagtacgggaatcgtgtgcacatc
ttgcctgttgatgataccgttgaaggagtcactggaaacctctttgatgcttacctgaaa
ccttattttctggaagcataccgcccggtgaggaagggcgatctcttcctagtcagagga
ggaatgaggagtgtggagttgaaggttatagagacagatcctgctgagtactgtgtggtt
gctccggacactgagattttctgtgagggtgagccggtgaagagagaggatgaagaaagg
ctagatgaagtgggttatgatgatgttggtggtgtgaggaagcagatggctcagatcagg
gagcttgttgagcttcccttaaggcatccacagctcttcaagtcgattggtgttaagcca
ccgaaggggattctgctctacggaccgcccgggtccggaaagactttgattgctcgcgcc
gtggctaacgagactggcgcgtttttcttctgtatcaatgggcctgagatcatgtcgaag
ctggctggtgagagtgagagcaacctcaggaaagcgtttgaggaggcggagaagaacgct
ccttccatcatattcatcgatgagattgactctattgcaccgaaaagagagaagacgaat
ggggaggttgagaggaggattgtgtctcagctcctcacgctgatggatggtctgaagtca
cgtgctcatgttattgtcatgggagctaccaatcgccccaacagtatcgacccggctttg
agaaggtttggaagatttgatagggagattgatatcggtgttcctgatgaaattggacgt
cttgaagttcttaggatccacacaaagaacatgaagctcgctgaagatgtagatcttgag
aggatctcaaaggatacacacggttatgtaggtgctgatcttgcagctctctgcacagag
gctgccctgcaatgcatcagggagaagatggatgtgattgatttggaagatgactccatt
gatgctgagatcctcaattccatggcagtgactaatgaacacttccacaccgctcttggg
aacagcaacccatctgcacttcgtgaaactgttgtggaggttccaaatgtttcttgggat
gacattggaggtcttgagaatgtcaagagagagctccaggagactgttcaataccctgtg
gagcacccagagaagttcgagaaattcggtatgtctccttcaaagggagtcctattctac
ggccctcctggatgtggtaagacccttttggccaaagctatagccaacgagtgccaagca
aacttcatcagtgtcaaaggtcctgagcttctcaccatgtggtttggtgagagcgaagcc
aatgtccgtgaaatcttcgacaaggctcgtcagtccgctccgtgtgttctcttctttgat
gagctcgactccattgcgactcagagaggaggtggaggcggaggtgatgctggcggtgcg
gctgatagagtcctcaatcagcttttgactgagatggatggaatgaacgccaaaaagact
gtcttcatcatcggagcgaccaacagacccgacattattgattctgctcttctacgtcca
ggaaggctcgaccagctcatttacattccactaccggacgaggactctcgcctcaatatc
ttcaaggcatgcttgaggaaatctcctgttgctaaagatgtggacatcaatgctctcgct
aagtacacacaggggttcagtggtgctgatatcactgagatttgccagaggtcttgcaaa
tacgccatcagagagaacattgagaaggacattgagagggagaagaggaggagcttgaac
ccagaggcgatggaggaagacggagtggatgaagtgtcagagatcaaagctgcacacttt
gaggagtcgatgaagtatgcacgcaggagtgtgagtgatgcagacatcaggaagtaccaa
gcctttgctcagacgctgcagcagtctagagggtttggttctgagttcaggtttgagact
aatgctggttcaggggcaaccactggagtcgctgatccttttgccacctctgcagctgct
gctgcagatgatgatgatctctacaactag
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