Brassica napus (rape): 106389248
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Entry
106389248 CDS
T04128
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106389248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106389248
03009 Ribosome biogenesis [BR:
bna03009
]
106389248
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106389248
Spliceosome [BR:
bna03041
]
Complex A
U2 snRNP components
U2 related factors
106389248
Complex B
106389248
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106389248
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106389248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_7
AAA_30
UvrD-helicase
SLFN-g3_helicase
NACHT
AAA_29
Motif
Other DBs
NCBI-GeneID:
106389248
NCBI-ProteinID:
XP_022554898
LinkDB
All DBs
Position
C3:complement(16204719..16207963)
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AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVMEDPSAKNNKSNVLGGAAAGISNLINKWNGKPYSQRYYDILEKRRD
LPVWLQKDEFLRTLQSNQTLILVGETGSGKTTQIPQFVLDAVEAENTNKHKKWLVGCTQP
RRVAAMSVSRRVADEMDVAIGEEVGYSIRFEDCSGPRTMLKYLTDGMLLREAMADPLLER
YKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVP
GRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDVLVFLTGEEEIEDACRKINKEVS
NLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPEPLTEGGPAGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTRTGEIMSEFPLDPQMSKMLIVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEA
KSKFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMSRFNL
KMCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTTRNFIRTVTDVRGDWLVDVAPHYYDLSNFPNCEAKRVLEKLYKKRERERNE
SKSRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagcggaaggttagtttgttcgacgttatggaagatccatcggcg
aagaacaacaaatccaacgttctcggaggtgcggctgcgggtatcagcaatctgattaac
aagtggaacgggaagccttactcgcagaggtactacgatattctcgagaagaggagagat
cttcccgtttggctgcagaaagatgagtttctccggacgttgcaatctaaccagaccctg
atcctcgtcggtgagactgggagtggtaaaactactcagattccacagtttgttttagat
gccgttgaggctgagaacacaaataagcataagaaatggttagttggctgcacgcagcct
cgtagagtcgctgcaatgtctgtttctcgtcgtgtagctgatgaaatggatgttgccatt
ggagaagaagtcggttacagcatccgttttgaggactgtagtggccctcgtactatgctc
aaatatttgactgatggtatgctgttgagagaggcaatggcggatccgcttcttgagaga
tacaaagttattattctcgacgaagctcacgagagaactttggctactgatgttctcttt
ggtcttctcaaagaggttttgaggaacagacctgaccttaagctagttgtgatgagtgca
accttggaagctgaaaagtttcaggagtattttagcggtgctcctcttatgaaagtccct
ggtaggcttcatccggttgagatattctacacacaggatcctgagagggactatcttgaa
gctgcgataaggaccgttgttcagatacatatgtgcgagccgcctggagatgttcttgtt
ttcttaactggagaggaggagattgaagatgcctgccgtaagatcaataaagaggtcagt
aaccttggagatcaagtggggcctgtcaaagttgtgcctctgtattctactctcccacct
gctatgcagcagaagatttttgaccctgcaccagagccgttaacagaaggtggtcctgct
ggtagaaagattgttgtctcaaccaacatcgctgaaacgtctttaaccattgatgggatt
gtttatgttattgaccctggttttgccaagcaaaaagtctacaacccacggatccgcgtt
gagtcgttgttggtgtccccaatatcgaaagcaagtgctcaccagaggtcaggtcgtgct
ggtagaacccgccctggaaaatgtttcaggctctacacagagaagagtttcaacaatgat
cttcagccgcagacgtatcccgagattttgagatcaaatcttgctaatactgtcctgaca
ttgaaaaagttgggtatagacgacttggtgcactttgatttcatggaccctcctgctcct
gagacattgatgagagcattagaggttttgaattatctgggagcattggatgatgaaggt
aacttgacaaggactggtgagataatgagcgagtttcccttggatccacagatgtcaaag
atgctcattgtcagccctgagttcaactgttcaaatgagattctctcagtttctgcaatg
ttatcagtaccgaattgctttgttcggcctagagaggctcaaaaagcagcagatgaagct
aaatctaaatttggacacattgatggagatcacctgacgctgctgaacgtgtaccacgcc
tacaagcaaaacaatgaagacccaaactggtgttttgagaactttgtcaacaacagagca
atgaagtctgcagacaatgtgaggcagcagctagtgagaataatgtcgaggtttaatctc
aagatgtgtagcacggatttcaacagtcgtgactactacgtcaatatcagaaaggccatg
ctgtctggttatttcatgcaggtggctcacctagaacgcactggccattacttgaccgtc
aaagataaccaagtggttcacttgcatccatccaattgcctggatcacaaaccggagtgg
gtgatttataatgaatatgtcttgactactcgcaatttcattcgcactgttacagatgtc
cgcggtgactggttagtagatgttgcaccgcattactatgatctttccaacttccccaat
tgtgaagcaaaaagagtccttgagaagctttacaagaagagagagagggaaaggaacgag
agcaagagtcgaaagtga
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