Brassica napus (rape): 106389258
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Entry
106389258 CDS
T04128
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
bna
Brassica napus (rape)
Pathway
bna03018
RNA degradation
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106389258
09123 Folding, sorting and degradation
03018 RNA degradation
106389258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106389258
03041 Spliceosome [BR:
bna03041
]
106389258
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106389258
mRNA degradation factors
5'-3' decay
Lsm complex
106389258
Spliceosome [BR:
bna03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
106389258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
106389258
NCBI-ProteinID:
XP_013684923
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Position
A6:complement(25735965..25737529)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDGALESVRDHDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFNQPEAL
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaagaaaggaaacggtgttggatttggccaagttcgttgacaagggtgttcaa
gttaagctcaccggtggtagacaagtcactggaactcttaagggctacgatcagttgctc
aaccttgttcttgatggggctctagagtctgtgcgagatcatgatgatcctttgaagacc
actgaccagacaagacgcctcggtttaattgtttgccgtggaactgcagtgatgctcgtc
tcaccaactgatggaactgaagaaatcgctaaccctttcaatcaaccagaagctctctaa
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