Brassica napus (rape): 106389776
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Entry
106389776 CDS
T04128
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
bna
Brassica napus (rape)
Pathway
bna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
106389776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bna03036
]
106389776
03400 DNA repair and recombination proteins [BR:
bna03400
]
106389776
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106389776
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
106389776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
106389776
NCBI-ProteinID:
XP_013685571
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All DBs
Position
A3:complement(27929558..27934017)
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AA seq
1159 aa
AA seq
DB search
MEEDEDMFLSSLGVTSANPADIEQTILDEATKKLDNDESVEERLEGINLLPSSQSEILNK
LRAVKFEIDAVASTVEQAEEEDGLQSGSVLQNALAKDRLRSLRKRKNELEKELSGLHGQG
GTSGGADRGDILRDLVKGEPSSRKRKLKEVRKPSKREGKKVKVVSFHEDTDFDAVFDAAS
AGFVETERDELVRKGILTPFHKLEGFERRLQQPGPSNTRNLPEGEDDNEDSSSIDRAVQS
MSLAAKARPTTKLLDAHDLPKLEATPVPFRRLRKLYKTNDSSDSDAKKSKGGKGKKKRPL
PKRKWTKRISNEDSSLQENEDGRRISATSSCEEEELDDFDEVDDSEKSSVPLEGGLNIPE
GIFIKLFDYQRVGVQWLWELHCQKAGGIIGDEMGLGKTVQVLSFLGSLHFSKMYKPSIVI
CPVTLLRQWRREARTWYPDFHVEILHDSAKDSNGKGRVDASESDYDSEVSADGDHEQKSK
NTKKWSSLINRVLNSDSGLLITTYEQLRLHGEKLLNIEWGYAVLDEGHRIRNPNAEITLV
CKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASP
LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASS
EVEDIFDGNKNSLYGIDVMRKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWK
QQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSDDVFVFVL
TTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKV
YHRQIYKHFLTNRILKNPQQRRFFKARDMKDLFILNDDGDSNASTETSNIFSQLSEDINI
VGAQTENTTDSTTQLDTHDAAEELSGEKDAETNGEPVDEETNILKSLFDAHGIHSAVNHD
AIINANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSSVR
RRFGSTVNSRLTTADKSSAVKNGISAGLSSGKAPSSAELLNKIRGSREQAIGVGLEQTQT
SSSSSSRVGSLQPEVLIRQICSFVQRKGGSTDTSSIVNHFSDRVPAKDVPLFKSLLKEIA
TLRKDPNGSVWVLKSEYKD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacgaggatatgtttttgagtagcttaggggtgacatctgctaatcctgca
gatatcgaacagacgatactcgatgaggctacaaagaagcttgataacgatgagagtgtg
gaggagcggttggaaggaatcaatctacttccatcaagccagagcgagattttgaataaa
ctgagagctgtgaagtttgagatagacgctgttgcatctactgttgagcaagcggaggag
gaggatgggttgcagagtggttctgtgcttcagaatgctcttgctaaagaccgtcttaga
agccttaggaagaggaaaaatgagcttgaaaaggaactctctggtttacatggtcagggg
ggcacttctggtggtgctgatcgtggtgatatactgcgggatctggtgaagggagagcct
agtagtcgtaagagaaagttgaaagaggttcggaaaccaagcaagagagaagggaagaag
gtgaaagtggtgtcgtttcatgaggatacggattttgacgccgttttcgatgcagcttct
gctggttttgttgaaacggaaagagatgaattggttaggaaaggaatcttaactcctttt
cacaagctcgagggttttgaacgccgacttcaacaacctggaccgtctaacacgcgtaac
ctacctgaaggagaagatgataatgaggactccagcagtattgatagagctgttcagtca
atgtcgctggctgcaaaagctcgcccaacgaccaagctacttgatgcacatgacttgcca
aagcttgaagcgacccctgttccttttagaaggctaagaaagctttacaagactaatgat
tcttcggatagtgatgcaaagaaaagtaaaggcgggaagggtaaaaagaagcggcctttg
cctaagaggaaatggacaaagcggatttctaacgaagactctagtcttcaagaaaatgaa
gatggacggagaatctcggccacgtccagttgtgaggaagaagagctagatgattttgat
gaggtagacgacagcgagaaatcttctgtaccgcttgaaggtggattaaacattcctgaa
ggcatatttattaaactttttgattaccaaagagttggagtgcagtggctctgggaactt
cattgccaaaaggctggtggcattatcggggacgagatgggtcttggtaagactgtacag
gtcttatcttttctcggatccttgcatttcagtaagatgtacaaaccgagtattgtcata
tgtcctgtcacactcttgcgtcagtggagaagagaagcacggacatggtacccggatttt
cacgtggaaatactccatgactcggcaaaagattcaaatggcaaaggacgagtcgatgcc
tctgaaagcgattatgatagtgaagtttcagccgacggtgatcatgagcaaaagtctaag
aacaccaagaaatggagttctttgataaaccgggttctaaactctgattcggggctactc
atcaccacatatgagcaattgaggctgcatggggagaagctgctcaatattgagtggggc
tatgcagtactggacgaaggccatcggatccggaacccaaatgctgaaatcactttggtg
tgcaaacagttgcagaccgtccatcgaattattatgactggggcaccgatccagaataaa
ctgacagaactctggtccttgttcgattttgttttcccgggaaaactgggagtcctaccc
gtgtttgaggctgagttctctgttcccataactgtgggtggctacgccaatgcatctccc
ttgcaagtgtcaacggcctacagatgtgcggttgttcttcgtgatctgatcatgccatac
ctcctccgccgaatgaaggctgatgtgaacgcacatctcacaaaaaagactgaacatgtt
ctcttctgcagcctcaccgtggagcagcgatctacctacagggcgttccttgctagctca
gaggtagaagatatttttgacggcaacaagaattctctgtatgggattgatgtgatgcgt
aagatatgcaaccaccctgatctacttgagagagaacactctcaccagaacccagattat
gggaatccagaacgcagcgggaagatgaaggttgttgcggaagttctcaaggtctggaaa
cagcaaggacaccgtgtacttctgttctcgcagactcagcagatgcttgacatcctcgag
agcttcttggttgcaaacgagtatagttatcggaggatggatggtcttacgccagtgaaa
cagaggatggcgttgattgatgagtttaacaactcagatgatgtgtttgttttcgttctg
acgaccaaggtgggtggtttgggaacaaacttgactggggcgaatagagtcatcatcttt
gacccggattggaatccctcaaatgatatgcaggcaagggaacgagcttggcgtataggg
cagaagaaggatgttactgtttacagattgatcacacgggggacaattgaggagaaagta
tatcatagacagatatataaacattttctcaccaataggattctgaagaatccacaacag
agaagattcttcaaagctagggatatgaaagatcttttcatcctgaatgatgatggtgat
agcaacgcctccaccgagacctctaacatcttcagtcagctgtctgaagatataaacatc
gtaggagctcaaacagagaatacaaccgattccactacacaacttgatactcacgatgca
gcagaagaactctcaggagagaaagatgcagaaaccaatggcgagccagtggatgaagag
acaaatatcttgaagagtctctttgacgcacatggaatacatagtgctgtgaatcacgac
gccatcattaacgcaaacgacgaggaagagaagatgagacttgaacaccaggcatctcaa
gtggcgcagagagctgcggaagcattgcgccaatcgcggatgctgcgtagccgcgaaagc
atctcagtacccacatggacgggaagatctggctgtgcaggtgcaccttcatctgtacgg
aggagattcggatcaactgtgaactcccggttaaccacagcagacaaatcatcagctgtc
aagaacggtatcagcgcgggtctatcttcaggcaaagcaccctcttccgcagagcttctc
aacaaaatccgcggaagcagagaacaagccattggcgttggccttgagcagacacagact
tcttcgagttcaagcagcagagtaggttcgttacagccagaggtattgatccgacagata
tgcagctttgtacagcgaaaaggcggaagcacggacacgagcagcattgtcaaccatttc
tcggacagagttcctgctaaggacgtaccgttgtttaagagtcttttgaaggagattgcc
acgcttcgtaaggatcccaacggttcggtgtgggtcctcaaatcagaatacaaagactag
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