Brassica napus (rape): 106389897
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Entry
106389897 CDS
T04128
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
bna
Brassica napus (rape)
Pathway
bna03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106389897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106389897
04121 Ubiquitin system [BR:
bna04121
]
106389897
03036 Chromosome and associated proteins [BR:
bna03036
]
106389897
03400 DNA repair and recombination proteins [BR:
bna03400
]
106389897
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106389897
Ubiquitin system [BR:
bna04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
106389897
Chromosome and associated proteins [BR:
bna03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
106389897
DNA repair and recombination proteins [BR:
bna03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
106389897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-HC5HC2H_2
RTT107_BRCT_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
zf-RING_6
zf-RING_10
PHD_NSD
PTCB-BRCT
zf-Nse
Motif
Other DBs
NCBI-GeneID:
106389897
NCBI-ProteinID:
XP_013685703
LinkDB
All DBs
Position
C3:complement(65390307..65394714)
Genome browser
AA seq
921 aa
AA seq
DB search
MGDDGATHLEKMGRELKCPICLSLFNSAVSLTCNHVFCNACIVKSMKVDATCPVCKVPFH
RREIRGAPHMDSLVSIYKNMEVASGLHMFVSLTKQSSPEKEMHVGDASIEKENGKKRVGS
SKARTSKKRGSKRNKETDVDATGPIVMKPSSQTNKRVQLSQNHSSQTLTKSTESLESAEK
LRDYTDKTVIRLNEHPSLNKEDNLAPLFWLRDEDDGESLSSPTESDQLLNVTPVDVPSFS
DLKDSDHEGPSKAVEQRPHPGDMFDSEMFEWTQRPCSPEILPSPVKAKDLGRGEIDLPQR
ELSKDASSNKKRKAGSARKKVVNVRVGVSKEDHMASSAGENIGERQVIGGTSGKSIRKDG
KLDENVKAKRATRNKGQTSEVQSGVKKSVEAEGKQGTKRKRSSVKVSAEQPVAVSNELSL
GTENVGKGDQEPEKQSPAEKPSLKKRRKSQTGDLSERSEKKTSEKRSKLDSCATPSRVTQ
SRGKKILSDELNQEGDRQDSTNKKKPNVDKCNHTVQDSEKRSTMNKPSLGGSVLLRRCSG
PRTNKFPCAFCQSSVETEASGKMSHYHKGDPVSADFSGGSNVIHVHKNCAEWAPNVYFNR
RTAVNLDVELTRSRRITCSCCGLKGAALGCYNESCKNSFHVTCAKLIPECRWDDKNFVML
CPLDASSKLPCEEASPKGRKRKRAPEGPLQAQANQVSEKSDISELQRKPFHGLPKKMVLC
CSGLTDEANSVILEFAELSGVTVSRKWEPRVTHVIASTNENGACKRTLKFMMGILEGKWI
LSIDWIKACMKNGEYVCEEPYEISIDVHGTRQGPYIGRQRALNKEPKLFNGLKFYIMGDF
ELAYKGMIVAAGGTILCRRPISNDDNEVSTIIVFNVEPSKKKTLTERRSDAEALARSVNA
RAASSSWVLDSIAGCQVLELI
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgacggcgcaactcacctggagaagatgggaagagaactcaagtgccctatc
tgcttgagtctatttaattccgcagtttcgcttacctgcaaccatgtcttttgcaatgca
tgtatagtgaaatctatgaaagtcgatgctacttgtcctgtctgtaaagtcccattccat
cgtagagagattcgaggagctcctcatatggatagcttggtgagcatttacaagaacatg
gaagttgcttctggtctccacatgtttgttagcctgactaaacaatcatcaccagaaaaa
gaaatgcatgtgggagatgcttccattgaaaaggaaaacggtaagaaacgtgtgggatct
agtaaggcccgaacatccaagaagagagggtctaaaagaaacaaggagacagatgtagat
gccaccggacctattgttatgaagccttcatcccaaaccaataaaagggtgcagctgtcg
cagaatcactcttctcaaactttaacaaaatctacagaatctcttgaatcagctgaaaaa
ctcagggactacactgataaaactgtgattcgtttgaacgagcatccaagtctgaataaa
gaagataatctagcacctttgttctggttgagagatgaagatgatggggagagcttaagc
tcaccaacagaaagtgatcagcttttaaatgtgacaccagttgatgttccttctttcagt
gatttgaaggactcagatcatgagggcccatccaaagcagtcgagcaaaggccacatcca
ggagacatgtttgacagtgaaatgtttgaatggactcaaaggccttgttctccagagatt
ctgcctagtccggtgaaggccaaggacctaggtagaggtgagattgatcttccccaaagg
gaactatctaaagatgcatcatcaaataaaaaacgcaaagcaggaagtgcaagaaagaaa
gttgttaatgtacgtgttggggtttccaaggaggaccacatggcatcgtctgcaggagag
aatattggtgagagacaagtgattggtggaacttctggaaaatctatcaggaaagatgga
aagcttgatgaaaatgtgaaagctaaacgggctacaagaaacaagggccagacttcagaa
gttcagtctggtgttaaaaaatctgtggaagcagagggaaagcaagggacaaagaggaaa
agatctagcgttaaagtgtctgcagagcagccggttgctgtatctaatgagctctcactt
ggaacagagaacgttggtaagggggatcaggaacctgaaaaacaaagtcctgcagagaaa
ccctctctgaaaaagagaagaaaatctcaaacgggtgatctctctgagagaagtgaaaag
aagacttcagaaaagagatcaaaacttgattcctgtgcaaccccaagcagagttacacaa
tcccgtggcaagaaaatcctaagtgatgagttgaatcaagagggtgatagacaagattca
actaacaaaaagaaacccaatgtggataaatgcaatcataccgtgcaagattcagagaaa
cgctcaacgatgaacaagccctcgcttggaggtagtgtacttctgcgacgatgttctgga
ccacgaacaaataaattcccttgtgcattctgtcagtcctcagtcgaaacagaggcttca
ggaaaaatgtctcactaccacaaaggtgatcctgtctctgctgattttagtggagggtct
aacgtcatacatgttcacaaaaactgtgctgaatgggctccaaatgtatacttcaacaga
cgtacagcagtcaaccttgatgtggagctgacaagaagccggagaataacttgcagttgc
tgtgggcttaaaggggcagcacttggttgttacaatgagagttgcaagaatagctttcac
gttacgtgtgcaaaactgataccagaatgcagatgggacgataaaaactttgtaatgcta
tgccctttggatgcatcctctaagttgccctgtgaagaggctagtccaaaaggaagaaaa
cgcaagcgtgctcctgaaggaccattgcaagctcaggctaatcaagtatctgaaaaatct
gacatcagtgagctccagagaaagccttttcacggattacccaagaaaatggttctatgc
tgttcaggacttacagatgaagcgaatagtgtgattttggaatttgctgaactgtctgga
gttacagtctcgagaaaatgggaaccaagagttacacacgtcattgcatcaaccaacgaa
aatggagcctgcaaaaggacactcaaattcatgatggggatcttagaggggaaatggatt
cttagcattgattggatcaaggcctgtatgaaaaacggagaatatgtatgcgaggagcca
tatgagatttccattgatgttcatggaacacgacaaggaccttatattggaaggcaaaga
gctttaaacaaggaaccaaaactttttaacggactaaagttttacataatgggagacttc
gagcttgcttacaaaggtatgattgtagcagcaggaggaacaatcctgtgcaggcgaccc
atttctaatgatgataatgaagtttccacgatcatagtgtttaatgttgagccaagcaag
aagaaaactctgacggagagaagatccgatgctgaggccttggctagatctgttaatgca
agagctgcaagtagttcatgggtcttggattctattgcgggttgccaagttctagaattg
atataa
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