Brassica napus (rape): 106390100
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Entry
106390100 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 34
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03013
Nucleocytoplasmic transport
bna03015
mRNA surveillance pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106390100
09122 Translation
03013 Nucleocytoplasmic transport
106390100
03015 mRNA surveillance pathway
106390100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bna03019
]
106390100
03041 Spliceosome [BR:
bna03041
]
106390100
03009 Ribosome biogenesis [BR:
bna03009
]
106390100
03012 Translation factors [BR:
bna03012
]
106390100
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106390100
Messenger RNA biogenesis [BR:
bna03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106390100
mRNA cycle factors
Stress granule specific factors
106390100
Spliceosome [BR:
bna03041
]
Complex C
Other components
EJC/TREX
106390100
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
90S particles
Helicases
106390100
Translation factors [BR:
bna03012
]
Eukaryotic type
Initiation factors
eIF-4
106390100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
Helicase_RecD
AAA_22
CMS1
CbiA
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
106390100
NCBI-ProteinID:
XP_013685945
UniProt:
A0A816IHR9
LinkDB
All DBs
Position
C3:complement(71144781..71147319)
Genome browser
AA seq
404 aa
AA seq
DB search
MAAAKGSSDWRSVGGALDDENLVFETTKGIKPIASFDEMGMNDKVLRGVYDYGFKKPSEI
QQRAVMPILKGRDVIAQAQSGTGKTSMIAISVCQIVNTSSRKIQVLVLSPSRELASQTEK
TIQAIGVHTSIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKSVKLL
ILDESDEMLSKGLKDQIYDVYRSLPHDIQVCLISATLPQEILEMTNKFMTDPVRILVKRD
ELTLEGIKQYYVDVGEEEWKFDTLCDLYGRLVINQAIIFCNTRQKVDWLTEKMRSSNFIV
SSMHGDKRQKERDEIMNQFRSFKSRVLIASDVWARGIDVQTVSHVVNYDVPNNPELYIHR
IGRAGRFGREGVAINFVKNSDTKTLRDIERYYGTKIREMPADLA
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcgaaaggaagcagcgactggagaagtgtaggaggagcgttggatgacgag
aatcttgtcttcgaaacgaccaaagggatcaaaccaatagcgagtttcgacgagatgggg
atgaatgataaagttcttcgcggagtctacgactacggtttcaagaaaccttctgagatt
cagcagagagctgtgatgcctatcctcaaaggacgcgacgtcatcgctcaggctcagtcc
ggtacgggcaaaacctccatgattgccatctccgtctgccaaatcgtcaacacttcctcc
agaaagattcaagtgttggtcttgtctccatcaagggaactggcttcacaaacagagaag
acgatacaggccattggagtacacaccagtattcaggcacatgcctgcatcggtggtaag
agcattggagaagacatcaagaagctggagcgtggtgtgcacgctgtgtccgggacgcct
ggtcgagtctacgatatgataaagagagggagtttacaaaccaaatccgtcaagcttttg
atcttggatgaatcagatgaaatgctgagcaaaggtttgaaagaccagatctacgacgtt
tacagatctcttccacacgatattcaggtttgcttgatatctgctactcttcctcaagag
attctggagatgacaaataagtttatgacggaccctgtgaggatacttgtgaagcgtgac
gagttgactcttgaagggattaaacaatattacgttgatgttggggaagaagagtggaag
ttcgatacactttgtgatctttatgggaggcttgttatcaatcaagcaatcatcttctgt
aacacaagacaaaaggtggattggctaactgagaagatgaggagtagtaactttatagtc
tcgtcaatgcatggagacaagcgtcaaaaggagagagacgaaatcatgaaccagttccgg
tcttttaaaagccgtgttttaatcgcatcagatgtatgggcacgagggattgatgttcag
acagtttctcatgtcgtaaactatgatgtaccaaataacccggagctttacatacatcgc
attggacgagctggtcgttttgggagggaaggtgttgcgattaactttgtgaaaaactct
gacacaaagactcttcgtgacattgagaggtactacggtactaaaatccgggagatgcct
gctgatcttgcctaa
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