Brassica napus (rape): 106390209
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Entry
106390209 CDS
T04128
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
bna
Brassica napus (rape)
Pathway
bna00040
Pentose and glucuronate interconversions
bna01100
Metabolic pathways
Module
bna_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
106390209
Enzymes [BR:
bna01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
106390209
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Nab2-zf4
Motif
Other DBs
NCBI-GeneID:
106390209
NCBI-ProteinID:
XP_013686078
UniProt:
A0A078FZT4
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Position
C4:3875106..3876502
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AA seq
367 aa
AA seq
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MTTFNVQLYGARGDGKTDSTKPFLTAWTLACGSEAQSMVYIPRGTYLVRNLVFWGPCKNI
ITFKIDGKLVAPKNYWSIGNSGYWILFAKVNRILVYGGTIDAKGAGYWSCRKKGGHCPQG
ARSISFSWCNNVLLSGLTSLNSQNLHVTVHHSSNVRIQNIRIRAPSRSPNTDGIIVQSSS
GVTISGAVIGTGDDCIALNQGSVNIYIERVLCGPGHGISIGSLGDHADEEGVNNVTVTNS
VFTKTRNGVRIKSWARPSTGFVRNVEFRNLVMRNVGNPLIIDQNYCPSGKGCPNQSSGVK
ISGVTFANIKGTSTTPIAMKLDCSGSHHCTEITLKNIKLTYMKGATTSYCKNAHGGASGV
VVPMNCM
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgactacgtttaacgtacaattatatggagctagaggtgatgggaaaacagactcgacc
aagccatttttgacggcttggacattagcatgcggctcagaggctcaatccatggtctac
attccccgtggaacatacctggtacgaaatcttgtcttttggggtccttgcaagaacata
ataactttcaaaatcgatggaaaactcgtggctccaaaaaactactggagtataggtaat
tctggttattggatcctattcgctaaggtaaaccggatattggtttacggtggaacgatt
gatgctaaaggagctggttattggtcttgtagaaagaaaggtggccactgtcctcaaggt
gcaagatctatatcgtttagctggtgcaataatgttctactaagtggccttacgtcgttg
aatagccagaatctgcatgtcacggttcatcattcttctaacgttcggattcagaacata
agaattagggcgccgagtagaagccctaacactgatggtattatcgtccagtcttcttct
ggggtcaccattagtggggcagtcattggaactggggatgactgcattgctcttaatcaa
ggatctgtgaacatttatatcgaacgtgtgctgtgtggaccaggacatggaatcagcatt
gggagtcttggggatcacgctgatgaggaaggtgtcaataatgtaaccgtcacgaactct
gttttcaccaagacgcgaaacggtgtaagaataaagagttgggctaggccgagcacaggg
tttgtgagaaatgtggagtttcgaaacctggtaatgaggaatgttggtaacccgctaatc
atcgatcaaaactattgccctagtggaaaaggctgccctaatcagagctctggtgtgaag
ataagtggagtgacttttgcaaacataaagggaacatcaacgacaccaatagctatgaaa
ctggattgtagtggaagccatcattgcacagagattacattgaaaaacattaagctcact
tacatgaaaggagcaacaacttcttactgcaagaacgctcatggaggagcctctggagtt
gtggtaccaatgaattgtatgtga
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